Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0435400-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:15514723:15519165:-1 gene:Os10g0435400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MATH-BTB protein 44, MDC protein with a BTB domain 44, MDC protein having BTB domain 44 description:TRAF-type domain containing protein. (Os10t0435400-01)
Sequence	ATGGCGACAACGACGACGTCCACCGTCACGACCATCGCGGCGCAGGCTTATCACGTACTG AAGATCAACGGGTACTCCAACACCTTGAAAGCCGGCCGCCACCACCCCCTCAGCTCCTGT CCGTTCAGCGCAGGAGGCCACACCTGGCATGTCAGCTACTACCCACACGGATGCCGCGAC AGCAACAAGGACTGCATCTCCATCTTCCTCGTGCTTGAGGACATCGTCACCGACGAGGAC GTGATGGCAAAAGCTACATTCAGCCTGCTCGATCGATACGGGAACCCGGTGCCCTCGTAC ACCTATCACACCAAATTACGTAACTTTTCAACATCTTCTGGTAGGGCAAGGGGGTTCGAA AACTTTATTAGGAGGGACGAATTAGAGCGATCGGAATATCTCAATGATGACTACTTTGCC GTTGCTGCCCATGTAATCATCCCAAAGAAAAAGCCATCTGTCGTCGTACCACCGTCGAAC ATGCATCTGTATTTTGGTGATCTCCTCGTAAGCAAAGAAGGCACCGATGTCAAGTTCCTG GTCGGCGGCGAGATGTTTGCGGCGCACCGGTTGGTGCTGGCGGCACGGTCACCGGTCTTC AAGGCAGAGCTTTTCGGGCCGACGAAGAAAGGCACCATAGATGCGATACAGATTGACAAT ATGGAAGCACGAGTGTTCAAGGCTCTGCTTGAGTTCATCTACACAGACATTTGGTCAGAG ATAGGTCATGGAAAAGACAATGTAGCTATGGCTCAACAGTTGCTTGCTGCTGCAGACAGG TATGGCTTACAGAGGTTAAAGTTTGTCTACGAAGATAAGTTGTGCAACCATATTGATACA TGCTCAGTGTCAACCATGTTGGTGCTAGCGGAGAAGCACCATTGTTGCAAACTCAAGGAG GCATGCTCTACGTTCCTTAGTTTCATGAGCCCTCCTATTGTTGAAGATCTAAATTCCAGC ATATTTGGCAGTGAATTGGAGAAGACGGTTTCTTCTTCAGAGAACCATGGAAGTCAAATT AACCGTACAGATATTAGGATTCAACCGTGGCAAAATGCAGATGTCTAG

Peptide Sequence

PEP ID	Os10t0435400-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:15514723:15519165:-1 gene:Os10g0435400 transcript:Os10t0435400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MATH-BTB protein 44, MDC protein with a BTB domain 44, MDC protein having BTB domain 44 description:TRAF-type domain containing protein. (Os10t0435400-01)
Sequence	MATTTTSTVTTIAAQAYHVLKINGYSNTLKAGRHHPLSSCPFSAGGHTWHVSYYPHGCRD SNKDCISIFLVLEDIVTDEDVMAKATFSLLDRYGNPVPSYTYHTKLRNFSTSSGRARGFE NFIRRDELERSEYLNDDYFAVAAHVIIPKKKPSVVVPPSNMHLYFGDLLVSKEGTDVKFL VGGEMFAAHRLVLAARSPVFKAELFGPTKKGTIDAIQIDNMEARVFKALLEFIYTDIWSE IGHGKDNVAMAQQLLAAADRYGLQRLKFVYEDKLCNHIDTCSVSTMLVLAEKHHCCKLKE ACSTFLSFMSPPIVEDLNSSIFGSELEKTVSSSENHGSQINRTDIRIQPWQNADV

Transcript Sequence

Transcript ID	Os10t0435400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:15514723:15519165:-1 gene:Os10g0435400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MATH-BTB protein 44, MDC protein with a BTB domain 44, MDC protein having BTB domain 44 description:TRAF-type domain containing protein. (Os10t0435400-01)
Sequence	TGCTGAAGGTTTATTGATAATAATCTAGCATACTAGCCTTATGTGCTGATAGTTTTTGAC AGAAACATAGGCATGTAGCACAAATGATTTGCTTGATACTAAGAAATTACCTTGTGAAGT GAAGAGTGGTTGCCCTCTTGTCTCCCATCCAATTAAAGTACAGTCAAGCAAATTATGGCC ATGTTTCTTGGTCCATTCATCAAGACATGAAAGCATCAATGAAAAGGAGAACTGAAGTTC CATGAGTGACTGGATCCAAGAGGCTGGCAATCTGGCATAACTTACCTGGGTCTGCCGCTT TACCAAGCAGGAACAGCAGCCTCTGCTAGATAAGTTCTCTAAGAAGGTTGTCGGGTGTAA GCCAAAAGATGCTGCCGTCAGGAGGAAGACTGACACAAATCAAGACAGTGCTAATGGTGT TACTAGTACACCTAAGTGATGGTAATTGAACTGCCACAATGGGCAATTAAAGAGGTAGAG AGGAAATGCCGAAGCTTTCTGTGATTAGTGTCAGTGGTGGACATTGTCTGGTGGCTTGGA GCCAAGTCTGCTCGCCTGATGAGTATGGTGGTCTTGGAATCAAGGATTTACATCCTGTTC GGTCGAGCACTGCGTATGAAGTGGCTGGCACTGACGGTACAGCAAAATGATCGCGCCCAT GGACAATGCTGAAGAAACAAGAACACAAGACTCTGGAAAACATCTTCTTCGCAGCAAAAA GGGTTGAGGTAGGAAACGTCGTCAACATTGATTTCTGGAGGTCCAATTGGTTGCCCAGCA TCAGCTCCTCGATGCCATGCCTGTCCTGCTTTGTGTGCCAAGATGGTCTCTTGGTAACTG AGGGTCTGACAAACTGTCGACGGGTGAAGGATATTGTGGGTGCACCATCGTGTAGAACTT TGAGCTAATACTTTCAGGTATGGGACTTAGTAGAAGAGAAGAAACTGAACCAGCGAGAAG AAGATGTGTTTTTCTGGACAACGGCGAGGGGTGGTAACTTCTCAGTCGACTCGGGTGTAC AACATGTTCTTCCTGGCCAGAACGAGATGGTCTTGGGACAGGATGGTCTGAGAGACAAGA GCACCATCCAAGATCAAGTTATTCATGTGGCTTACCTCAAAGGGAGATGCCTCACGGCAG ACAATCTACAAAAGAGAGGCTGGCCCCATCATCAACACTGCCACCTCTGTTCTTTAGCGA GTGAGGATTGTACCCACCTGTTTGCTGCCTGCAACTTCACTAATGCAGTTTGGGATATGT TGAGGAACTGGCTCAACATTGGTTTTCAGCTACCACGGGATCAGGCCCTCGATCTTGGTG AGTGGTGGCTTCAGTCAAGAGTGTGTTGTCGTGCTGCTCACAGGAAATCCTTTGATTCCT TTTTTTCATGGTATGCTGGTTCATATGGAAGGAGAGGAATGCAGGGGTCTCCGAGAACAG AGCAAGCACGCCTAGTAGTGTATATGGAGCAATTAAGGATGAAATCTTGGTCTGGAGGGC TGCGGGTTTGTTCAAAAGAGATTAGTCCCTAGTTCAACCCAAACCTTTTTTCGCCAGGAC GATCTCCTGTTTTGTTTTTTTGGCTACCCAGCATGGTGGGTGCCACCGGTTTCAACAGCC TACTGTCATTGTAATATCTGCATTTCCCCTTCAATTTTAATGGAATTCGATCGGCCTCTT CTTTGGCTGATCCAGCTAAAAAAAAGGGCCTGACTGTCATGTTGTTTTTTTGAAGCAAAA TGACTGTCATGTTGTCAACCACTGAAAATGTAGAACAAGGTTTTGGCATCATCAAACTTG ACATAACTGCCAGCCTTCTGAGCAAGAAAGAAGATAAGGAGGAGCTCTTTGTATTACAAT GAGCTTTAGACTCGCATCTTCTTCAAGAAAGAAATGCAATACTCAAGGTACAAGAAAGGT CCTTTTATATGCACTCCTTAAGCTTTCTGAAGTATCATATGCTGAGGAGTTTCTCAGACC ATCAGTACCAACTGCCAGCCGGACGAGTTCACCCAGCACGATTAGTGTGAGGGCCTGCGA CGGCGATCAAGATGCGAGAAGTCTGTGACCACGAACGACGGCGAGATGGCACTAACACCG GCGACCAGTTGGAATTGGATTCTAACACTTGTCCTACGAGAAGCAGGCGTCCCGTCTGGT AGTAGCTTGCTAGAAATCAAATCTTTTCTCTTTTCCCAGCAACCAGTTGGAATTGGATTC TAACACTGGTCCTACAAGAAGCAGGCGTGCAGTCTGGTAGTAGCTAGGAAATCAAATCTT TTCCGCAAGAGATCGGTCTACCAACACAAGACTGGAAAAGAGATCGGTCTACCAACACAA GACCGCAGGCATGGCGACAACGACGACGTCCACCGTCACGACCATCGCGGCGCAGGCTTA TCACGTACTGAAGATCAACGGGTACTCCAACACCTTGAAAGCCGGCCGCCACCACCCCCT CAGCTCCTGTCCGTTCAGCGCAGGAGGCCACACCTGGCATGTCAGCTACTACCCACACGG ATGCCGCGACAGCAACAAGGACTGCATCTCCATCTTCCTCGTGCTTGAGGACATCGTCAC CGACGAGGACGTGATGGCAAAAGCTACATTCAGCCTGCTCGATCGATACGGGAACCCGGT GCCCTCGTACACCTATCACACCAAATTACGTAACTTTTCAACATCTTCTGGTAGGGCAAG GGGGTTCGAAAACTTTATTAGGAGGGACGAATTAGAGCGATCGGAATATCTCAATGATGA CTACTTTGCCGTTGCTGCCCATGTAATCATCCCAAAGAAAAAGCCATCTGTCGTCGTACC ACCGTCGAACATGCATCTGTATTTTGGTGATCTCCTCGTAAGCAAAGAAGGCACCGATGT CAAGTTCCTGGTCGGCGGCGAGATGTTTGCGGCGCACCGGTTGGTGCTGGCGGCACGGTC ACCGGTCTTCAAGGCAGAGCTTTTCGGGCCGACGAAGAAAGGCACCATAGATGCGATACA GATTGACAATATGGAAGCACGAGTGTTCAAGGCTCTGCTTGAGTTCATCTACACAGACAT TTGGTCAGAGATAGGTCATGGAAAAGACAATGTAGCTATGGCTCAACAGTTGCTTGCTGC TGCAGACAGGTATGGCTTACAGAGGTTAAAGTTTGTCTACGAAGATAAGTTGTGCAACCA TATTGATACATGCTCAGTGTCAACCATGTTGGTGCTAGCGGAGAAGCACCATTGTTGCAA ACTCAAGGAGGCATGCTCTACGTTCCTTAGTTTCATGAGCCCTCCTATTGTTGAAGATCT AAATTCCAGCATATTTGGCAGTGAATTGGAGAAGACGGTTTCTTCTTCAGAGAACCATGG AAGTCAAATTAACCGTACAGATATTAGGATTCAACCGTGGCAAAATGCAGATGTCTAGGA ACGTTATTTCCAGTGCTATAAAATTTGTTTACTTTGTTTCTAATAATTATGTAGATTGAC TTTGGACTTGAGTTTTTACAAGATGGTGTATCCTT