Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0414500-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:14474829:14478809:-1 gene:Os10g0414500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tetrapyrrole methylase family protein. (Os10t0414500-01)
Sequence

ATGGCGTCGCTGCTCCGCCTCCAGGCCCTCGCCCTGAACCTAACGGCACCCCGCCGCCTC
CCCTTCCTCCCTCTCCGCGTCACGACTGCGACGGCTCCGCTCGCCGGCCGCCTCTCCACC
GCCGCCGCCTCTGGCAGCTCGCCGGAGTCACCTGCCTCGGAACCGGATTTGGATTCCGGG
CTGTATCTTGTGGCAACGCCAATCGGGAACCTCGAGGATATCACCTTAAGGGCATTGCGT
ATCCTCAAATGTGCTGATGTCATACTATCAGAAGACACAAGGCATTCTGGAAAGCTACTT
CAACATTATAACATCAAGACACCTCTTCTCAGCTTTCATAAGTTTAATGAGCGTGAAAGA
GAGCCTAATATCTTAAAGAGACTTCATGAAGGGGAAGCAGTTGCATTGATTAGTGATGCT
GGTACTCCTGGAATTAGTGATCCTGGCATGGAACTGGCTAGACTATGTGCTACTGAGGGA
ATCCCTGTTATCCCCATTCCTGGGCCGTCTGCTGCAATAGCTGCTCTTTCTGCATCTGGT
TTGCCAACTGATGAATTTACATTTGTGGGGTTTTTACCAAAGCATGCTCGATCAAGAAAA
GAAAGGCTTGAAATATCTGCCTGTCAAGCTGCCACACAAATTTTCTATGTTCCTCCCCAT
GGAATTCACCAATTTCTTTCTGATGCTGCTTCATCATTTGGTGATTCTAGGTCATGTGTT
ATTGCAAGGGAGATAACGAAATTACACGAAGAGTTTTGGCGGGGAACTATTGGTGAAGCA
AATGAAGCCTTTGCAACTCGGCAGCCAAAGGGAGAAATTACAGTGCTCATAGAGGGAAAG
TTAATTTCAGCTGATGAAACTCCATCTGAGGATTTCCTTGAGCATGAACTCAGAGAATTG
ATGACGCAGGGACATCCTCTGTCAGCGGCAGTGAAAATGGTGAGTGAAGCTACATCAGCA
AAGAAGAAGGATGTTTATGCCCTCGCATTAAGGTTATTTGGAAAATGA

Peptide Sequence

PEP ID

Os10t0414500-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:14474829:14478809:-1 gene:Os10g0414500 transcript:Os10t0414500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tetrapyrrole methylase family protein. (Os10t0414500-01)
Sequence

MASLLRLQALALNLTAPRRLPFLPLRVTTATAPLAGRLSTAAASGSSPESPASEPDLDSG
LYLVATPIGNLEDITLRALRILKCADVILSEDTRHSGKLLQHYNIKTPLLSFHKFNERER
EPNILKRLHEGEAVALISDAGTPGISDPGMELARLCATEGIPVIPIPGPSAAIAALSASG
LPTDEFTFVGFLPKHARSRKERLEISACQAATQIFYVPPHGIHQFLSDAASSFGDSRSCV
IAREITKLHEEFWRGTIGEANEAFATRQPKGEITVLIEGKLISADETPSEDFLEHELREL
MTQGHPLSAAVKMVSEATSAKKKDVYALALRLFGK

Transcript Sequence

Transcript ID

Os10t0414500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:14474829:14478809:-1 gene:Os10g0414500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tetrapyrrole methylase family protein. (Os10t0414500-01)
Sequence

GGGAGCAAACGGCGGCGACGCTTCGCCTCCCTCTCCGGCCGCCGCCGCCGCCGCCGCAGC
CCATGGCGTCGCTGCTCCGCCTCCAGGCCCTCGCCCTGAACCTAACGGCACCCCGCCGCC
TCCCCTTCCTCCCTCTCCGCGTCACGACTGCGACGGCTCCGCTCGCCGGCCGCCTCTCCA
CCGCCGCCGCCTCTGGCAGCTCGCCGGAGTCACCTGCCTCGGAACCGGATTTGGATTCCG
GGCTGTATCTTGTGGCAACGCCAATCGGGAACCTCGAGGATATCACCTTAAGGGCATTGC
GTATCCTCAAATGTGCTGATGTCATACTATCAGAAGACACAAGGCATTCTGGAAAGCTAC
TTCAACATTATAACATCAAGACACCTCTTCTCAGCTTTCATAAGTTTAATGAGCGTGAAA
GAGAGCCTAATATCTTAAAGAGACTTCATGAAGGGGAAGCAGTTGCATTGATTAGTGATG
CTGGTACTCCTGGAATTAGTGATCCTGGCATGGAACTGGCTAGACTATGTGCTACTGAGG
GAATCCCTGTTATCCCCATTCCTGGGCCGTCTGCTGCAATAGCTGCTCTTTCTGCATCTG
GTTTGCCAACTGATGAATTTACATTTGTGGGGTTTTTACCAAAGCATGCTCGATCAAGAA
AAGAAAGGCTTGAAATATCTGCCTGTCAAGCTGCCACACAAATTTTCTATGTTCCTCCCC
ATGGAATTCACCAATTTCTTTCTGATGCTGCTTCATCATTTGGTGATTCTAGGTCATGTG
TTATTGCAAGGGAGATAACGAAATTACACGAAGAGTTTTGGCGGGGAACTATTGGTGAAG
CAAATGAAGCCTTTGCAACTCGGCAGCCAAAGGGAGAAATTACAGTGCTCATAGAGGGAA
AGTTAATTTCAGCTGATGAAACTCCATCTGAGGATTTCCTTGAGCATGAACTCAGAGAAT
TGATGACGCAGGGACATCCTCTGTCAGCGGCAGTGAAAATGGTGAGTGAAGCTACATCAG
CAAAGAAGAAGGATGTTTATGCCCTCGCATTAAGGTTATTTGGAAAATGAGTAAAATGCG
ATGTTTTGCTCTCATATGGTAACTAAACTTTCAGAAACCATGAAGGATGTTTGGAATGTG
TCATATTTTTCAGTCCATTTGAACATCGCGGATATCTTATTGCCTGTGTGCGTGCGCAGT
AAATAGCCTATTGGGCACGTCCAAGGCCAGGGCCACTCACTAGCAAAGGCAGCTTTCTGA
AGATGGGAATAGCAATGGCAGCTTTCTGAAGAACTAGCTGATTCAAACTTTTGAAAGAGG
TGATATTTGGGGAATTTTCAGAAGGTACCATTCAAATTTGCTGGAGGATGATGCTGTTCT
GGCGATGGAAAAAGTCTTCGATCTGTAGCTTCATCGTTGTACAACAGAAGCTTCGCTGCA
TCTGCATGACAAGCTATAGCTACCTGGTTAGGTTAGGCGGTAAGTTAGTATGATCACCTT
AGATTTTATCGCAATAGTTATCGCAGTGTATACATTTTGTCTTAGATTCACATTTATCGA
AATCATTATTATGGAGCTAATGGGCCGAATCCGTCGTG