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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0412100-03
CDS Infomation

cds chromosome:IRGSP-1.0:10:14357056:14360448:-1 gene:Os10g0412100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CARBON CATABOLITE REPRESSOR 4A description:Carbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation (Os10t0412100-01);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-02);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-03)
Sequence

GATATTGGACATGTTCTAAGATTTGAATGCGTGTCTGTGGATGCTGAAAAAAAGGTACCT
GTTGGACCTCCAACTTCAATTATGACATCCCGTGTGATTCCAGCACCAACTCCAACTCCA
CGTCGCCTTATCCAAGTGAATGGAGATGTTTTGAGTCACTTAGATTTGGACAGCCAAACA
TCTTTCGGGACATTCTCAGTGCTGTCCTACAATATTCTTGCTGATGCATATGCTACAAGT
GACGCGTATAGCTACTGCCCAACATGGGCACTTTCTTGGACATACAGAAGACAGAACTTG
ATGCGTGAGATTATTGGTTATCATGCTGATATCATCTGTCTTCAGGAGGTGCAACTGAAC
CACTTCGAAGATTTTTTTTCACCCGAGCTTGATAAACATGGATATCAGGCACTTTACAAG
AAAAGGACAACAGAGGTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTT
TTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAGGTTGAGTTCAATAAGGCTGCA
CAATCATTGACAGACGCAATTATTCCCTCTACCCAAAGAAGAGTTGCTTTGAGTCGATTG
ATTAAGGATAATGTTGCACTGATTGCGGTTTTAGAAGCTAAATTCGGCAACCATGGAACT
GACAATCCTGGCAAAAGGCAGCTTCTTTGTGTGGCAAATACACACGTAAATGTCCATCAA
GACCTCAAAGATGTGAAGCTGTGGGAGGTTCAAACTCTCCTAAAAGGGTTGGAAAAAATA
GCTGTTAGTGCGGACATTCCAATGTTGGTCTGTGGGGATTTCAATTCAGTCCCTGGGAGT
TCTCCACATGGACTTCTTGCTATGGGCAAAGTTGATCAATTGCATCCAGATCTGGCCATA
GATCCCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGGTGAGT
GCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGGAGCACCAGCGGAGG
AGGATGGACCCTGCAACAAATGAACCACTTTTCACAAACTGCACACGAGATTTCACTGGA
ACGGTTGATTACATATTTTACACAGCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTT
TTGGATGAGGAAAGTTTAAGAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGAT
CATATAGCACTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGA

Peptide Sequence

PEP ID

Os10t0412100-03
PEP Infomation

pep chromosome:IRGSP-1.0:10:14357056:14360448:-1 gene:Os10g0412100 transcript:Os10t0412100-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CARBON CATABOLITE REPRESSOR 4A description:Carbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation (Os10t0412100-01);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-02);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-03)
Sequence

DIGHVLRFECVSVDAEKKVPVGPPTSIMTSRVIPAPTPTPRRLIQVNGDVLSHLDLDSQT
SFGTFSVLSYNILADAYATSDAYSYCPTWALSWTYRRQNLMREIIGYHADIICLQEVQLN
HFEDFFSPELDKHGYQALYKKRTTEVYTGAPHAIDGCATFFRRDKFSHVKKYEVEFNKAA
QSLTDAIIPSTQRRVALSRLIKDNVALIAVLEAKFGNHGTDNPGKRQLLCVANTHVNVHQ
DLKDVKLWEVQTLLKGLEKIAVSADIPMLVCGDFNSVPGSSPHGLLAMGKVDQLHPDLAI
DPLGILRPASKLTHQLPLVSAYSSFARMVGVGYDLEHQRRRMDPATNEPLFTNCTRDFTG
TVDYIFYTADSLSVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPRIRR

Transcript Sequence

Transcript ID

Os10t0412100-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:14357056:14360448:-1 gene:Os10g0412100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CARBON CATABOLITE REPRESSOR 4A description:Carbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation (Os10t0412100-01);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-02);Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed. (Os10t0412100-03)
Sequence

GATATTGGACATGTTCTAAGATTTGAATGCGTGTCTGTGGATGCTGAAAAAAAGGTACCT
GTTGGACCTCCAACTTCAATTATGACATCCCGTGTGATTCCAGCACCAACTCCAACTCCA
CGTCGCCTTATCCAAGTGAATGGAGATGTTTTGAGTCACTTAGATTTGGACAGCCAAACA
TCTTTCGGGACATTCTCAGTGCTGTCCTACAATATTCTTGCTGATGCATATGCTACAAGT
GACGCGTATAGCTACTGCCCAACATGGGCACTTTCTTGGACATACAGAAGACAGAACTTG
ATGCGTGAGATTATTGGTTATCATGCTGATATCATCTGTCTTCAGGAGGTGCAACTGAAC
CACTTCGAAGATTTTTTTTCACCCGAGCTTGATAAACATGGATATCAGGCACTTTACAAG
AAAAGGACAACAGAGGTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTT
TTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAGGTTGAGTTCAATAAGGCTGCA
CAATCATTGACAGACGCAATTATTCCCTCTACCCAAAGAAGAGTTGCTTTGAGTCGATTG
ATTAAGGATAATGTTGCACTGATTGCGGTTTTAGAAGCTAAATTCGGCAACCATGGAACT
GACAATCCTGGCAAAAGGCAGCTTCTTTGTGTGGCAAATACACACGTAAATGTCCATCAA
GACCTCAAAGATGTGAAGCTGTGGGAGGTTCAAACTCTCCTAAAAGGGTTGGAAAAAATA
GCTGTTAGTGCGGACATTCCAATGTTGGTCTGTGGGGATTTCAATTCAGTCCCTGGGAGT
TCTCCACATGGACTTCTTGCTATGGGCAAAGTTGATCAATTGCATCCAGATCTGGCCATA
GATCCCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGGTGAGT
GCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGGAGCACCAGCGGAGG
AGGATGGACCCTGCAACAAATGAACCACTTTTCACAAACTGCACACGAGATTTCACTGGA
ACGGTTGATTACATATTTTACACAGCGGATTCATTGTCAGTGGAGTCGTTGTTGGAACTT
TTGGATGAGGAAAGTTTAAGAAAAGACACGGCCCTTCCTTCTCCTGAATGGTCTTCGGAT
CATATAGCACTCTTGGCAGAATTCCGGTGCAAGCCTAGAATCAGACGGTGACACCTTAGG
TCGCGAATAGATGGTTAACTTCAGCACCCATGCGGTGGAACATTCTTCCATGGTGTGTGG
GACTTGAGGAGGGATGGACGAAAGCGGATCCTCGGGGAAGGACCACCAGCACCAGCAGGC
TTAGGGTAGTGGCCTCATGAAAGGGAGGCTTGTAATGTTGATTACCTCTTACATTTCCAA
CTCATGATGTTTTTAAGCGGCCCCATTGTAATATCACTTTCTATAGAAGGAAAGATCTCC
TGAGAGAGAGACATTTTTATGACAGATTCAGATGCCATCATGGCTAGGCCATTTCAAATT
TT