Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0409400-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:14171332:14172873:-1 gene:Os10g0409400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:polygalacturonase isoenzyme 1 beta subunit, BURP domain-containing protein 16, beta subunit of polygalacturonase 1, polygalacturonase 1 beta subunit, non-catalytic PG1beta subunit description:beta subunit of polygalacturonase 1, Abiotic stress response (Os10t0409400-01)
Sequence	ATGGCAACATCCTTTCTCTTCTCTCTCATTCTCCTCCTCATCACTGCCCTTTCTCTTCCC TTTCCTCTCCATGCGTCATCTGTAGACCCCTTGAGCGCCGGTGCGACCACCGTCCGCTAC TGGAATCGCAAGATTCCTAACAATGCTCCTCACCCCGACTTCTTCCTTTCACTCCTCTCC CCTCTTCCCGCATCTGTCTCCTCTTCCCTCTCCTCTCCGCTCTCCATATCCCCATCCATC TGCCGCTCTGCTCGCCTCCTCTGCCCTAACTCTACCTATTTTCAGTCCCTCTCAAGCACT GTCTTCATAGATGGATGCACCTTTAGTTACTCATGCACCTTCACATACGAACATACCAAC ATCACTATAAAGCCTGGTATATTTTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTC AGAATGCCAGATATAGCGAATGAGTTGACGACGGCTCGTTCGTCGTTCCTTCCCCGATCG ATCGCGGATAGGATCCCATTCAAGGCTGAGGCTGTCAAGTCCCTGTTCGGGCTAGAGCCA AACACAACCTTGGCAAAGGCTGTGGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGC AAGGGCGAGACGAAGCGGTGCGTCACATCAGCAGAGGACATGATCGACTTTGCCGTGGCG ATGTTAGGTGATGACATTGTGGTTCGGAGTACCGTACTGCCAAATGGGCCCGGCGAGTCG ATCATGATTGGTAAGGTCAAGGGAATAAATGGTGGCAAGATTACCAGCTCGGTATCATGC CACGAATACTTATTTCCATACATGGTATACTACTGCCACTCGGTGCCTAAAATCAGAGTT TATGAGGCCGAGATCCTGTCCGTCCAGACGAAGGAGAAGATCAACAGCGGTGTCGCCATC TGTCACATTGACACGTCTGCCTGGAATGCTGGGCATCCTGCTTTTGTGGCACTAGGTGGG AAGCCAGGTCAGAACAAGGTCTGCCACTGGATATTTAATGGCTCTATGACCTGGGTCATC GCCGACAAATCCTAA

Peptide Sequence

PEP ID	Os10t0409400-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:14171332:14172873:-1 gene:Os10g0409400 transcript:Os10t0409400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:polygalacturonase isoenzyme 1 beta subunit, BURP domain-containing protein 16, beta subunit of polygalacturonase 1, polygalacturonase 1 beta subunit, non-catalytic PG1beta subunit description:beta subunit of polygalacturonase 1, Abiotic stress response (Os10t0409400-01)
Sequence	MATSFLFSLILLLITALSLPFPLHASSVDPLSAGATTVRYWNRKIPNNAPHPDFFLSLLS PLPASVSSSLSSPLSISPSICRSARLLCPNSTYFQSLSSTVFIDGCTFSYSCTFTYEHTN ITIKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSLFGLEP NTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGES IMIGKVKGINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAI CHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIADKS

Transcript Sequence

Transcript ID	Os10t0409400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:14171332:14172873:-1 gene:Os10g0409400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:polygalacturonase isoenzyme 1 beta subunit, BURP domain-containing protein 16, beta subunit of polygalacturonase 1, polygalacturonase 1 beta subunit, non-catalytic PG1beta subunit description:beta subunit of polygalacturonase 1, Abiotic stress response (Os10t0409400-01)
Sequence	ACTTGTCTTTCCAGCACAGCTAGCATTCTACCAACCAATGGCAACATCCTTTCTCTTCTC TCTCATTCTCCTCCTCATCACTGCCCTTTCTCTTCCCTTTCCTCTCCATGCGTCATCTGT AGACCCCTTGAGCGCCGGTGCGACCACCGTCCGCTACTGGAATCGCAAGATTCCTAACAA TGCTCCTCACCCCGACTTCTTCCTTTCACTCCTCTCCCCTCTTCCCGCATCTGTCTCCTC TTCCCTCTCCTCTCCGCTCTCCATATCCCCATCCATCTGCCGCTCTGCTCGCCTCCTCTG CCCTAACTCTACCTATTTTCAGTCCCTCTCAAGCACTGTCTTCATAGATGGATGCACCTT TAGTTACTCATGCACCTTCACATACGAACATACCAACATCACTATAAAGCCTGGTATATT TTTTCGGGAGCAAGAATTGAAAGAGGGGAATGTGGTCAGAATGCCAGATATAGCGAATGA GTTGACGACGGCTCGTTCGTCGTTCCTTCCCCGATCGATCGCGGATAGGATCCCATTCAA GGCTGAGGCTGTCAAGTCCCTGTTCGGGCTAGAGCCAAACACAACCTTGGCAAAGGCTGT GGATGAAACGGTGGCGCAATGCCAGAGCTCGCCAAGCAAGGGCGAGACGAAGCGGTGCGT CACATCAGCAGAGGACATGATCGACTTTGCCGTGGCGATGTTAGGTGATGACATTGTGGT TCGGAGTACCGTACTGCCAAATGGGCCCGGCGAGTCGATCATGATTGGTAAGGTCAAGGG AATAAATGGTGGCAAGATTACCAGCTCGGTATCATGCCACGAATACTTATTTCCATACAT GGTATACTACTGCCACTCGGTGCCTAAAATCAGAGTTTATGAGGCCGAGATCCTGTCCGT CCAGACGAAGGAGAAGATCAACAGCGGTGTCGCCATCTGTCACATTGACACGTCTGCCTG GAATGCTGGGCATCCTGCTTTTGTGGCACTAGGTGGGAAGCCAGGTCAGAACAAGGTCTG CCACTGGATATTTAATGGCTCTATGACCTGGGTCATCGCCGACAAATCCTAATTACACAC ACGTTTCGATCTGAATCGATGAACCATATATATATGCAGCATCAGACCTATCTTAGTATA TATTGCTGGTCTGCTACTGCACTTCTCCAGTGCGATGTATCCGTGTGTTTTCAATATAAA TAAATATAAAGTAATTTTAT