Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0407000-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:13932964:13935275:-1 gene:Os10g0407000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 29 description:Pectin lyase fold/virulence factor domain containing protein. (Os10t0407000-01)
Sequence

ATGGCGCAGCAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCG
CGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCG
GTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACG
TACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCC
GGCTCGCCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCC
CAGTCGTCCAGGGTTATTGGGACAGGAACGTTTGGATGCGGAACAATTATTGTGGAGGGG
GAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCTGGGCAG
GCAGTTGCTCTCCGAGTAACAGCAGATAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGT
TGGCAAGACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAA
GGTAACTGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCAT
TGCAAATCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGT
TATGTGTTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGT
CGGCCTTGGGGACCGTTTGGAAGGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATT
AAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTT
GAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGTGGCTTGGTGTAGACAA
TTGCTTGATGTTGAAGTGGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGAT
AGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAG

Peptide Sequence

PEP ID

Os10t0407000-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:13932964:13935275:-1 gene:Os10g0407000 transcript:Os10t0407000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 29 description:Pectin lyase fold/virulence factor domain containing protein. (Os10t0407000-01)
Sequence

MAQQQPRRVLRVAPPGRGGARAEAERGEEGEAVFATVQAAVDAVPVGNRVRTVIRLAPGT
YREPVYVAKAKNLVTLSGEAGSPEATVITWDNTATRIKHSQSSRVIGTGTFGCGTIIVEG
EDFIAENITFENSAPQGSGQAVALRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIE
GNCDFIFGNSIALLEHCHIHCKSAGYITAHSRKSSSETTGYVFLRCIITGNGEAGYMFLG
RPWGPFGRVVFAHTFMDRCIKPAGWHNWDRSENERTACFFEYRCSGPGFRPSNRVAWCRQ
LLDVEVENFLSHSFIDPDLDRPWLIQMMAIKVPVSA

Transcript Sequence

Transcript ID

Os10t0407000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:13932964:13935275:-1 gene:Os10g0407000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 29 description:Pectin lyase fold/virulence factor domain containing protein. (Os10t0407000-01)
Sequence

GTGAAACCGCCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCG
CAGCAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCG
GAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGAC
GCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGG
GAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCG
CCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCG
TCCAGGGTTATTGGGACAGGAACGTTTGGATGCGGAACAATTATTGTGGAGGGGGAGGAT
TTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCTGGGCAGGCAGTT
GCTCTCCGAGTAACAGCAGATAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTTGGCAA
GACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAAC
TGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAA
TCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTG
TTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCT
TGGGGACCGTTTGGAAGGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCT
GCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTAC
AGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGTGGCTTGGTGTAGACAATTGCTT
GATGTTGAAGTGGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCT
TGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATT
GTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGT
GTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTC
C