Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0405600-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:13848985:13853377:-1 gene:Os10g0405600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphofructokinase 10 description:Phosphofructokinase family protein. (Os10t0405600-01)
Sequence

ATGGCTCTAAAATCACCAGTGGATTTTGCTGGCTCAATCACTTCAGGCCAGAAGGACCCG
TGTTGTTTTGGTGTGCCCGGCTGCAATCCGCGATGTGTTAGATACAATAAGAAATCAAGA
ACATGCCGATTGGTTACTAGAGCCATATCCGTCGATCGCCCGCAGCTAGACTTCTCAAAC
TCAGACTGGAAGAAGCAGTTCCAGGAGGATTTCGATAGGCGGTTCAGTTTGCCTCACTTG
AAAGATGTAATCGACGTTGAACCGAGGCCAACAACGTTTTCCCTCAAGAGCAGGACCCCT
CTGGAGAATGTTAATGGTTCTATGCAAGGATCATGGAATGGCTATGTGAATGACGATGAC
AGAGCACTTTTGAAGGTTATTAAGTTTGCTTCACCAACATCTGCTGGAGCTGATTGCATT
GACCCTGATTGCAGCTGGGTCGAACAATGGGTGCACCGTGCTGGCCCACGTAAACAAATA
TATTTTGAACCTCAGTATGTAAAGGCTGGAATTGTCACCTGTGGTGGACTTTGCCCTGGT
CTCAATGATGTCATTCGGCAGATTGTGCTTACACTGGAAAAATATGGAGTGAAAAACATT
GTTGGAATACAGCATGGTTTCCGTGGATTTTTTGAGGATCATTTAGCAGAAGTGCCACTT
AATAGGCAAGTTGTCCAGAATATCAATCTTGCTGGTGGAAGTTTCTTAGGAGTTTCTCGT
GGTGGAGCAAATATCTCAGACATTGTCGACAGCATACAGGCCCGGAGGCTTGACATGCTC
TTTGTTCTAGGTGGAAATGGAACTCATGCTGGAGCTAACCTTATACATGAGGAGTGCCGC
AAGAGAAAACTGAAAGTATCAATTGTGGGCGTTCCAAAAACCATTGATAATGACATACTA
CTGATGGACAAGACATTTGGATTTGATACAGCAGTTGAAGCAGCACAGAGAGCTATAAAC
TCTGCATATATTGAGGCACATTCTGCATTTCATGGCATTGGATTGGTCAAGCTGATGGGA
AGAAGCAGTGGCTTTATCACAATGCATGCTTCCCTGTCTAGTGGCCAAGTAGATATCTGC
CTGATACCTGAGGTACCGTTCACTCTTGATGGGCCAAATGGAGTTCTTCAACACCTTGAG
CACTTGATAGAAACCAAGGGATTTGCTCTGATTTGTGTAGCCGAAGGAGCGGGACAGGAA
CATCTGCAACAGTCAAACGCAACTGATGCATCAGGGAACATGATCCTTGGTGATATCGGC
GTGCACCTTCATCAGAAGATCAAGGCCCATTTCAAGGAAATAGGAGTACATTCTGATGTG
AAGTACATTGATCCTACATACATGGTCCGTGCTGTGCGTGCCAATGCATCCGATGCCATC
CTATGCACTGTGCTTGGTCAGAATGCTGTTCATGGTGCATTTGCAGGGTTCAGTGGCATC
ACAACCGGCATATGCAACACGCACAACGTCTACTTGCCAATCTCAGAAGTCATCAAGTCC
ACAAGGTTCGTCGATCCAAACAGCAGGATGTGGCACCGGTGTTTGACATCAACAGGGCAA
CCAGACTTCCACTGA

Peptide Sequence

PEP ID

Os10t0405600-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:13848985:13853377:-1 gene:Os10g0405600 transcript:Os10t0405600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphofructokinase 10 description:Phosphofructokinase family protein. (Os10t0405600-01)
Sequence

MALKSPVDFAGSITSGQKDPCCFGVPGCNPRCVRYNKKSRTCRLVTRAISVDRPQLDFSN
SDWKKQFQEDFDRRFSLPHLKDVIDVEPRPTTFSLKSRTPLENVNGSMQGSWNGYVNDDD
RALLKVIKFASPTSAGADCIDPDCSWVEQWVHRAGPRKQIYFEPQYVKAGIVTCGGLCPG
LNDVIRQIVLTLEKYGVKNIVGIQHGFRGFFEDHLAEVPLNRQVVQNINLAGGSFLGVSR
GGANISDIVDSIQARRLDMLFVLGGNGTHAGANLIHEECRKRKLKVSIVGVPKTIDNDIL
LMDKTFGFDTAVEAAQRAINSAYIEAHSAFHGIGLVKLMGRSSGFITMHASLSSGQVDIC
LIPEVPFTLDGPNGVLQHLEHLIETKGFALICVAEGAGQEHLQQSNATDASGNMILGDIG
VHLHQKIKAHFKEIGVHSDVKYIDPTYMVRAVRANASDAILCTVLGQNAVHGAFAGFSGI
TTGICNTHNVYLPISEVIKSTRFVDPNSRMWHRCLTSTGQPDFH

Transcript Sequence

Transcript ID

Os10t0405600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:13848985:13853377:-1 gene:Os10g0405600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phosphofructokinase 10 description:Phosphofructokinase family protein. (Os10t0405600-01)
Sequence

TTCCCTTCCCCCCACCCGATTCGTCTCCCCCCTCCGGCGCCCCTCGAGTTCTTGGATTCC
CTCTTCTTTTTCTTCTTCTTCTTGCGTTGGTACAACAATCCGTCGAGAGCTCCGTGGCGT
GGATTGGATTAATTCTCTCTCGCCGAGGAAGAAAGAAAAAAAAAAACGAGACGGAGGCAT
CGAGGTGGCCGTCTCCCCTCCGCCGCTATAACAACAAGCCGCCGCCGCCGCCGCCGTTGT
CGCCGCTTTGCTCTCTCCGCTACTCCGGCGACCGGGGAGAGGGTAGTTGCATGATCGGCA
ACATCAATCTGAAGAATGGCTCTAAAATCACCAGTGGATTTTGCTGGCTCAATCACTTCA
GGCCAGAAGGACCCGTGTTGTTTTGGTGTGCCCGGCTGCAATCCGCGATGTGTTAGATAC
AATAAGAAATCAAGAACATGCCGATTGGTTACTAGAGCCATATCCGTCGATCGCCCGCAG
CTAGACTTCTCAAACTCAGACTGGAAGAAGCAGTTCCAGGAGGATTTCGATAGGCGGTTC
AGTTTGCCTCACTTGAAAGATGTAATCGACGTTGAACCGAGGCCAACAACGTTTTCCCTC
AAGAGCAGGACCCCTCTGGAGAATGTTAATGGTTCTATGCAAGGATCATGGAATGGCTAT
GTGAATGACGATGACAGAGCACTTTTGAAGGTTATTAAGTTTGCTTCACCAACATCTGCT
GGAGCTGATTGCATTGACCCTGATTGCAGCTGGGTCGAACAATGGGTGCACCGTGCTGGC
CCACGTAAACAAATATATTTTGAACCTCAGTATGTAAAGGCTGGAATTGTCACCTGTGGT
GGACTTTGCCCTGGTCTCAATGATGTCATTCGGCAGATTGTGCTTACACTGGAAAAATAT
GGAGTGAAAAACATTGTTGGAATACAGCATGGTTTCCGTGGATTTTTTGAGGATCATTTA
GCAGAAGTGCCACTTAATAGGCAAGTTGTCCAGAATATCAATCTTGCTGGTGGAAGTTTC
TTAGGAGTTTCTCGTGGTGGAGCAAATATCTCAGACATTGTCGACAGCATACAGGCCCGG
AGGCTTGACATGCTCTTTGTTCTAGGTGGAAATGGAACTCATGCTGGAGCTAACCTTATA
CATGAGGAGTGCCGCAAGAGAAAACTGAAAGTATCAATTGTGGGCGTTCCAAAAACCATT
GATAATGACATACTACTGATGGACAAGACATTTGGATTTGATACAGCAGTTGAAGCAGCA
CAGAGAGCTATAAACTCTGCATATATTGAGGCACATTCTGCATTTCATGGCATTGGATTG
GTCAAGCTGATGGGAAGAAGCAGTGGCTTTATCACAATGCATGCTTCCCTGTCTAGTGGC
CAAGTAGATATCTGCCTGATACCTGAGGTACCGTTCACTCTTGATGGGCCAAATGGAGTT
CTTCAACACCTTGAGCACTTGATAGAAACCAAGGGATTTGCTCTGATTTGTGTAGCCGAA
GGAGCGGGACAGGAACATCTGCAACAGTCAAACGCAACTGATGCATCAGGGAACATGATC
CTTGGTGATATCGGCGTGCACCTTCATCAGAAGATCAAGGCCCATTTCAAGGAAATAGGA
GTACATTCTGATGTGAAGTACATTGATCCTACATACATGGTCCGTGCTGTGCGTGCCAAT
GCATCCGATGCCATCCTATGCACTGTGCTTGGTCAGAATGCTGTTCATGGTGCATTTGCA
GGGTTCAGTGGCATCACAACCGGCATATGCAACACGCACAACGTCTACTTGCCAATCTCA
GAAGTCATCAAGTCCACAAGGTTCGTCGATCCAAACAGCAGGATGTGGCACCGGTGTTTG
ACATCAACAGGGCAACCAGACTTCCACTGATTCAGGTATTGACAGTGGAAGCTCATAGCA
ACTGAAGCTAAAAACTATAGGCGGTTTTGTGCTGTATAGTAAGAGTGGTGCTTGTGCCGC
ATCACTCGTTTGATGTTTTTTCGTCTTTCATCAGAAAGAAACATCATCTTCCATTGATCC
TTGAGGTGCAAGATGGATACAATAAGCACCTCATTGAAAAGATAGCTTCTTTTTTATAGA
TTAGCAGTACATGGTTTATTAGAGACCACATAGAAGTAGAGAAGATTTCTAACTGCAAGG
GAGATGGTTAGCTCCCGTTACAACTGCAGAAACATATGTACACATTACACATTCTTCACA
GCTGAAATAATGGAGAGAACATTGCCACC