Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0405500-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:13842020:13848949:1 gene:Os10g0405500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3 description:Coiled-coil protein, Homologous chromosome pairing and synapsis in meiosis (Os10t0405500-01)
Sequence	ATGGAAGTTGAGCTGACGAACATTCAGAAAGCTACATCAAGTGACTATTGGAGTTTGGCC AGCAATCAATATCCATGTGGTAAATTCCCTAAGGTATCAGTTGGCGTCACAATTCCAAGG ACGAGTTCTGTATCAAGAGGCAGAGATGCTGCTAGTACCGCTGCATTTGAGAAGAACTTG TCTCAGGGAACTGATGGAAGATCTAGACCTCCCAAAATGGATAATGCTTCACTTCAGGTC TCTCCAGAAGCAGCAAACCACGGCGGATCTGCTAAAGAGGTTCCTAAACCTGTCCCTGCT AAGGTTTCTGTATCACAACCTGATGATAATGCAATTGAGCAAACAGGAACCTTTTCCTTT GGAACAAGAAGAGAACAGGACAGTCATCTTGATCAATTAGATAGGCCACCACTTGTGAGT TCCCAAGGAAAGCGTCAAGTGGAATCAGCTGATAAAAACAAGCCCAACAGTGAAATGCTC AGGATGAAACTGTGGGAGATCCTTGGTGGTACTTCACAAAACAAGGAGGCTGTTGCCTCA CCAAATCCTGAAGATATTGAGACGCCATGCCAACCTAAAAGTCAAATTGCCAATGGACCA TCTTCAGGAAGACAGAAGGTTTTCACTTCACCTGTTCCATATAATATTAAGACACCAGCT CAGTTTAATAGTCAAACAGCGAACAAACCATCCTCTGATCCAATTGAGTCAGACTCCGAC AGTCCTCAAGTAGTTGAAGTAAGACCTATTACTCGTTCGCTGGGGCGCAAGAAAGAACCA ACAGGCTCCACACATCAGGATAAGAGCGGGAGTGCAAAGAAACCATTGTCTACTCATCGT TCTACACCCAAGCAGAAAATATTGGACAATGTGTTTGCCTTCAACGATAAATGCACACCT AAAACAGTAGGAAAATCTGCAAATGGTGAATCTGGCAGCTTGAGGAATCTTAGAAGCTTG AGTAGGAGGGCTAAAGTTGAGCCAAAGAAGGCACATTGTTCGGACAGGATTTCTCATAAG ACTACACAGGATGATATGGAAAGAAAGGTACCTTCTAAATATATACCATCAGAGAAAAAA GGTGAGAAAACAAACTCCTTTTCTTCTTTATCCCGAACAGGAAAAACTGCTGAGAGTTGT TCTAGAAGCCCTAAAAGGGAGAGAAGGGTGAACACGATGGCTAATGTTGGGGCTCGAAAG ATGCAGTTATCTGAAAATTTACTGGTCAAGACTCTAAATGATGGTGAACACAAGCTCTCT TCTCCTCAGCTTACTTCCTTTAAGAGCAAGGGAAAATGTTCTTCTATATCGCCTCAACAG AAGGAGAATGATAATACCCACATCCCTGAAGCTTCAGACAGAACAGCAGCAAGAAATAGT TTTAACTCCACACCTTCTCCTGCTGCTAATCCATCTCCTGTACTGAGGAAGTACTCATGG GAACATGATGAGAATCCTGCGATAAATGGTAAATCTGGACAGAAGGATGCCAGTCCGTTG GCAGACAGATTCAGCGACATGCCAGATGATTTTGCAAGTCCTACTTTTGCAGCAAACATA AAAATATCCCCCCACAGAAGTAAAATGCTAGACGATGACCTATTTAGCTCCAAATATCCA AAAGGTGTGAACAGGTCAAGATCAACTTCCTTTACCTCGGATCCAGAATCGGAGCCATTG GACAAAATGGAGAAAACCAACGAGTTACCTGGCAGTGAATCTCCTAACTCTCAGGAGGAA AGACAGAACAGAAAACAACCACATCTTTCACCCCTTTCTCCTATTGAGAGTGAAGGGGCT CAAATTTCTATTCCAAGCTTTAGAAAAGGATATAAATCTCATAAATGGCTTTCAGATGTT GACAGCCCTGATAAATCTTCTATTGAGCATCTGGGCCGAAAATCACATCTAAAAGAGGGT AGAAAGGGCAAAAGGCAATTAACTTCGCCAACCCATTTTGCCACCTCTGGGACGCAAGAA ACAATGTCAGACAAAGAACCAGAAAAAGTCCCAGAAAACTACCTAACCAGGGCTTTTGAT CAGTTAGTAGTGGTGCTAGGAAGGTTCCAAACCAAAATCAAGTCTGAAACAAGGAATAAA AGTTCTAAGATACTTGCAGCTACTGGAGAGATAATACGCCAGCACCTTGAAGGGGTTGAG GGGCAGATGCAGGCTGATGTGGACAAGCTGGTCAATGCAGGAAAATCTAAAAGGAAACGT CTAGAGTCAACATTTGAAGAGCAACAAGAAAAGTTAAGGATTCTTCACGAGAAGTTCAAG GAGGAGGTCAACCAGCAGTTGCTCGGTTGCAAGAACTCTGTTGAGGATTTTGAGGCTTAC CATGCAGAACTTAAGGGAGTTGCTGACAAGCAAAAAGCCTCACACAAGAAGCTCCTTCAA AATGCTGAGAAGACAGTCGGCGCTCAGCTGAGCGACGCGGAAACCAAAATCGCTGAGGTC CAGAAGAGGGCACGGAAGAGGATGAAGGGCCTCAAATTTGTGCTCAAGGAGCTCATTGCA GAAACTGCAGAGTAA

Peptide Sequence

PEP ID	Os10t0405500-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:13842020:13848949:1 gene:Os10g0405500 transcript:Os10t0405500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3 description:Coiled-coil protein, Homologous chromosome pairing and synapsis in meiosis (Os10t0405500-01)
Sequence	MEVELTNIQKATSSDYWSLASNQYPCGKFPKVSVGVTIPRTSSVSRGRDAASTAAFEKNL SQGTDGRSRPPKMDNASLQVSPEAANHGGSAKEVPKPVPAKVSVSQPDDNAIEQTGTFSF GTRREQDSHLDQLDRPPLVSSQGKRQVESADKNKPNSEMLRMKLWEILGGTSQNKEAVAS PNPEDIETPCQPKSQIANGPSSGRQKVFTSPVPYNIKTPAQFNSQTANKPSSDPIESDSD SPQVVEVRPITRSLGRKKEPTGSTHQDKSGSAKKPLSTHRSTPKQKILDNVFAFNDKCTP KTVGKSANGESGSLRNLRSLSRRAKVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKK GEKTNSFSSLSRTGKTAESCSRSPKRERRVNTMANVGARKMQLSENLLVKTLNDGEHKLS SPQLTSFKSKGKCSSISPQQKENDNTHIPEASDRTAARNSFNSTPSPAANPSPVLRKYSW EHDENPAINGKSGQKDASPLADRFSDMPDDFASPTFAANIKISPHRSKMLDDDLFSSKYP KGVNRSRSTSFTSDPESEPLDKMEKTNELPGSESPNSQEERQNRKQPHLSPLSPIESEGA QISIPSFRKGYKSHKWLSDVDSPDKSSIEHLGRKSHLKEGRKGKRQLTSPTHFATSGTQE TMSDKEPEKVPENYLTRAFDQLVVVLGRFQTKIKSETRNKSSKILAATGEIIRQHLEGVE GQMQADVDKLVNAGKSKRKRLESTFEEQQEKLRILHEKFKEEVNQQLLGCKNSVEDFEAY HAELKGVADKQKASHKKLLQNAEKTVGAQLSDAETKIAEVQKRARKRMKGLKFVLKELIA ETAE

Transcript Sequence

Transcript ID	Os10t0405500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:13842020:13848949:1 gene:Os10g0405500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3 description:Coiled-coil protein, Homologous chromosome pairing and synapsis in meiosis (Os10t0405500-01)
Sequence	GTCACTAGGGGTCCAACCTTCTTTAGTTAATTTGGTATACTATTATCCCAAAAGCTGCAC CTATGGAAGTTGAGCTGACGAACATTCAGAAAGCTACATCAAGTGACTATTGGAGTTTGG CCAGCAATCAATATCCATGTGGTAAATTCCCTAAGGTATCAGTTGGCGTCACAATTCCAA GGACGAGTTCTGTATCAAGAGGCAGAGATGCTGCTAGTACCGCTGCATTTGAGAAGAACT TGTCTCAGGGAACTGATGGAAGATCTAGACCTCCCAAAATGGATAATGCTTCACTTCAGG TCTCTCCAGAAGCAGCAAACCACGGCGGATCTGCTAAAGAGGTTCCTAAACCTGTCCCTG CTAAGGTTTCTGTATCACAACCTGATGATAATGCAATTGAGCAAACAGGAACCTTTTCCT TTGGAACAAGAAGAGAACAGGACAGTCATCTTGATCAATTAGATAGGCCACCACTTGTGA GTTCCCAAGGAAAGCGTCAAGTGGAATCAGCTGATAAAAACAAGCCCAACAGTGAAATGC TCAGGATGAAACTGTGGGAGATCCTTGGTGGTACTTCACAAAACAAGGAGGCTGTTGCCT CACCAAATCCTGAAGATATTGAGACGCCATGCCAACCTAAAAGTCAAATTGCCAATGGAC CATCTTCAGGAAGACAGAAGGTTTTCACTTCACCTGTTCCATATAATATTAAGACACCAG CTCAGTTTAATAGTCAAACAGCGAACAAACCATCCTCTGATCCAATTGAGTCAGACTCCG ACAGTCCTCAAGTAGTTGAAGTAAGACCTATTACTCGTTCGCTGGGGCGCAAGAAAGAAC CAACAGGCTCCACACATCAGGATAAGAGCGGGAGTGCAAAGAAACCATTGTCTACTCATC GTTCTACACCCAAGCAGAAAATATTGGACAATGTGTTTGCCTTCAACGATAAATGCACAC CTAAAACAGTAGGAAAATCTGCAAATGGTGAATCTGGCAGCTTGAGGAATCTTAGAAGCT TGAGTAGGAGGGCTAAAGTTGAGCCAAAGAAGGCACATTGTTCGGACAGGATTTCTCATA AGACTACACAGGATGATATGGAAAGAAAGGTACCTTCTAAATATATACCATCAGAGAAAA AAGGTGAGAAAACAAACTCCTTTTCTTCTTTATCCCGAACAGGAAAAACTGCTGAGAGTT GTTCTAGAAGCCCTAAAAGGGAGAGAAGGGTGAACACGATGGCTAATGTTGGGGCTCGAA AGATGCAGTTATCTGAAAATTTACTGGTCAAGACTCTAAATGATGGTGAACACAAGCTCT CTTCTCCTCAGCTTACTTCCTTTAAGAGCAAGGGAAAATGTTCTTCTATATCGCCTCAAC AGAAGGAGAATGATAATACCCACATCCCTGAAGCTTCAGACAGAACAGCAGCAAGAAATA GTTTTAACTCCACACCTTCTCCTGCTGCTAATCCATCTCCTGTACTGAGGAAGTACTCAT GGGAACATGATGAGAATCCTGCGATAAATGGTAAATCTGGACAGAAGGATGCCAGTCCGT TGGCAGACAGATTCAGCGACATGCCAGATGATTTTGCAAGTCCTACTTTTGCAGCAAACA TAAAAATATCCCCCCACAGAAGTAAAATGCTAGACGATGACCTATTTAGCTCCAAATATC CAAAAGGTGTGAACAGGTCAAGATCAACTTCCTTTACCTCGGATCCAGAATCGGAGCCAT TGGACAAAATGGAGAAAACCAACGAGTTACCTGGCAGTGAATCTCCTAACTCTCAGGAGG AAAGACAGAACAGAAAACAACCACATCTTTCACCCCTTTCTCCTATTGAGAGTGAAGGGG CTCAAATTTCTATTCCAAGCTTTAGAAAAGGATATAAATCTCATAAATGGCTTTCAGATG TTGACAGCCCTGATAAATCTTCTATTGAGCATCTGGGCCGAAAATCACATCTAAAAGAGG GTAGAAAGGGCAAAAGGCAATTAACTTCGCCAACCCATTTTGCCACCTCTGGGACGCAAG AAACAATGTCAGACAAAGAACCAGAAAAAGTCCCAGAAAACTACCTAACCAGGGCTTTTG ATCAGTTAGTAGTGGTGCTAGGAAGGTTCCAAACCAAAATCAAGTCTGAAACAAGGAATA AAAGTTCTAAGATACTTGCAGCTACTGGAGAGATAATACGCCAGCACCTTGAAGGGGTTG AGGGGCAGATGCAGGCTGATGTGGACAAGCTGGTCAATGCAGGAAAATCTAAAAGGAAAC GTCTAGAGTCAACATTTGAAGAGCAACAAGAAAAGTTAAGGATTCTTCACGAGAAGTTCA AGGAGGAGGTCAACCAGCAGTTGCTCGGTTGCAAGAACTCTGTTGAGGATTTTGAGGCTT ACCATGCAGAACTTAAGGGAGTTGCTGACAAGCAAAAAGCCTCACACAAGAAGCTCCTTC AAAATGCTGAGAAGACAGTCGGCGCTCAGCTGAGCGACGCGGAAACCAAAATCGCTGAGG TCCAGAAGAGGGCACGGAAGAGGATGAAGGGCCTCAAATTTGTGCTCAAGGAGCTCATTG CAGAAACTGCAGAGTAACCCAACCAAAGTTGGTTCACTCTGCACAAGTACATAGCAAAGG TGTATTGACCAGGACGTACAGTTTCACTTACAAATAGGCTACTGTTTCATTTACAAAGGG TTAAAGGAGAATTTACAAAAGGGTACAGGAGAATAGTGTCAGAATGCATATAGGTTTCTT ACCAGATGAACTTTTCACAGCATACATTCAAGGATTCTATTCTTTCCATTAGCATACATT CTTCGCCTAGCTATCAGATAGACATGCATTGTTACCGGCGTGCCAGTTTGAATAATTTAC ATTCCTGAGAACCGACACATTTTCTGTGTACTGTAATCGTATTTTATGAAAATTGAAAAT TCATAAGTTGGAACATCTACTGC