Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0405300-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:13833340:13836254:1 gene:Os10g0405300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein. (Os10t0405300-01)
Sequence	ATGGAGAGCCGCAAGGAGGAGGAGCAGCATGGGGGAGGAGGGGCGGTGGGGTGGATGACG GTGCCGGCGTTCGGGGAGTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGAC TTCTCCAAGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTC GGCGGGGACGACGACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCC CCCAACGCCTCCGCCGCCGCCGACGACCACCGCCGGCCGCTCCACGCCGCCCACGACGAC TCGCCCACGGGGAGGAAGAAGTTCCTTAGCTATTTCCAGTGCTGTATCAGAGCCTGA

Peptide Sequence

PEP ID	Os10t0405300-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:13833340:13836254:1 gene:Os10g0405300 transcript:Os10t0405300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein. (Os10t0405300-01)
Sequence	MESRKEEEQHGGGGAVGWMTVPAFGEWDMKNGAVPDYSMDFSKIREMRKQNKRELSRASL GGDDDLLAAQQHKAAAPQPAPNASAAADDHRRPLHAAHDDSPTGRKKFLSYFQCCIRA

Transcript Sequence

Transcript ID	Os10t0405300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:13833340:13836254:1 gene:Os10g0405300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein. (Os10t0405300-01)
Sequence	CTCTCTCTCTCTCTTCTCTTCTTCTTCTTCAATTTTCCTCGCACCGTCGGCGAAGGCGAA GCGGAAGAGGCGGCGGAGCAGTAGCTAGTCTACTAGCTAGTAGTAGTAGCTCGCCGGCGA GCGGAGAGGAGGAGCCGAGGAGGAGGAGGAGCTTCGTGGCCGGCCGGGCCGCCATGGAGA GCCGCAAGGAGGAGGAGCAGCATGGGGGAGGAGGGGCGGTGGGGTGGATGACGGTGCCGG CGTTCGGGGAGTGGGACATGAAGAACGGCGCGGTGCCGGACTACTCCATGGACTTCTCCA AGATCCGGGAGATGCGCAAGCAGAACAAGCGCGAGCTCTCCCGCGCCAGCCTCGGCGGGG ACGACGACCTCCTCGCCGCGCAGCAGCACAAGGCCGCCGCGCCGCAGCCCGCCCCCAACG CCTCCGCCGCCGCCGACGACCACCGCCGGCCGCTCCACGCCGCCCACGACGACTCGCCCA CGGGGAGGAAGAAGTTCCTTAGCTATTTCCAGTGCTGTATCAGAGCCTGAAGAACTGTGA CCCTGCCCGTCGTGTTGGCGGCACGTAACTCCTGCGCAAATAGCTCTTAGGTTTCTTGGG TACTGTAAAGTTTGCGTAAATGTGTAATCTCCACCTGCTCTGTAATCTGTTGCTCTTTGC AGAGAAAAAAAGGGGACCGATTGTGAACAATGAAAAAGCGTATTTGTTCATGCTGTTTTT CGCAGAATTGTTCGCGACTTCCGGTGCAGTATCATCGTCCTTTGAAAGGGATAGGATCCG AGGATGTATGAGTATAACTTATGATTGATTTGGTTCTTGGTTGGAGAATATAATTTTCAC CTGGTGACCTGTGATGATG