Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0397200-02
CDS Infomation	cds chromosome:IRGSP-1.0:10:13353118:13356120:-1 gene:Os10g0397200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIIE, beta subunit domain containing protein. (Os10t0397200-01);Similar to predicted protein. (Os10t0397200-02)
Sequence	AAGCACAGGGCCCAACCGGTTAATGCTCCATCCGCTCCAGCAAGGCCACTACAACCTATT AAGTTTTCAAATGATACAGAAAGGCTACAACACATCAATTCAGTTAGGAAATCTCCTATT GGAGCACAGATCAAACTTGTCATTGAATTGCTGTACAAGACAAGACAAGCTTTTACTGCG GAGCAAATAAATGAAACAACTTATGTTGATATCCATGGGAATAAGTCTGTCTTTGACAGT CTGAGGAACAATCCTAAAGTACATTATGATGGGAGACGTTTCTCTTACAAGTCCAAGCAT GATTTGAAGGGAAAAGATCAACTACTTGTTTTGGTAAGAAAGTATCCGGAGGGTCTTGCT GTGGTGGAAGTCAAGGATGCGTACCCAACTGTAATGGAAGATTTGCAGGCACTGAAGGCA GCAGGTGAAGTTTGGCTGTTATCGAACATGGATTCCCAGGAGGACATTGTGTATCCTAAC GACCCAAAGGCAAAGATCAAGGTCGACGATGACCTGAAGCAGCTCTTCCGGGAGATGGAG TTACCGCGGGACATGGTGGATATCGAGAAGGAGCTCCAGAAGAATGGCATCAAGCCCATG ACCAACACAGCTAAACGGCGGGCTGCAGCACAGATCAATGGGGTGCAGCCCAAGGCTAAG CCTAAGAAGAAGCAGCGTGAGATCACACGCCGGACCAAGCTCACGAACGCCCATCTGCCT GAGCTGTTCCAGAACCTCAACACTTGA

Peptide Sequence

PEP ID	Os10t0397200-02
PEP Infomation	pep chromosome:IRGSP-1.0:10:13353118:13356120:-1 gene:Os10g0397200 transcript:Os10t0397200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIIE, beta subunit domain containing protein. (Os10t0397200-01);Similar to predicted protein. (Os10t0397200-02)
Sequence	KHRAQPVNAPSAPARPLQPIKFSNDTERLQHINSVRKSPIGAQIKLVIELLYKTRQAFTA EQINETTYVDIHGNKSVFDSLRNNPKVHYDGRRFSYKSKHDLKGKDQLLVLVRKYPEGLA VVEVKDAYPTVMEDLQALKAAGEVWLLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREME LPRDMVDIEKELQKNGIKPMTNTAKRRAAAQINGVQPKAKPKKKQREITRRTKLTNAHLP ELFQNLNT

Transcript Sequence

Transcript ID	Os10t0397200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:13353118:13356120:-1 gene:Os10g0397200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIIE, beta subunit domain containing protein. (Os10t0397200-01);Similar to predicted protein. (Os10t0397200-02)
Sequence	CAAAGCACAGGGCCCAACCGGTTAATGCTCCATCCGCTCCAGCAAGGCCACTACAACCTA TTAAGTTTTCAAATGATACAGAAAGGCTACAACACATCAATTCAGTTAGGAAATCTCCTA TTGGAGCACAGATCAAACTTGTCATTGAATTGCTGTACAAGACAAGACAAGCTTTTACTG CGGAGCAAATAAATGAAACAACTTATGTTGATATCCATGGGAATAAGTCTGTCTTTGACA GTCTGAGGAACAATCCTAAAGTACATTATGATGGGAGACGTTTCTCTTACAAGTCCAAGC ATGATTTGAAGGGAAAAGATCAACTACTTGTTTTGGTAAGAAAGTATCCGGAGGGTCTTG CTGTGGTGGAAGTCAAGGATGCGTACCCAACTGTAATGGAAGATTTGCAGGCACTGAAGG CAGCAGGTGAAGTTTGGCTGTTATCGAACATGGATTCCCAGGAGGACATTGTGTATCCTA ACGACCCAAAGGCAAAGATCAAGGTCGACGATGACCTGAAGCAGCTCTTCCGGGAGATGG AGTTACCGCGGGACATGGTGGATATCGAGAAGGAGCTCCAGAAGAATGGCATCAAGCCCA TGACCAACACAGCTAAACGGCGGGCTGCAGCACAGATCAATGGGGTGCAGCCCAAGGCTA AGCCTAAGAAGAAGCAGCGTGAGATCACACGCCGGACCAAGCTCACGAACGCCCATCTGC CTGAGCTGTTCCAGAACCTCAACACTTGATTGCTCTACGCTTATTCGACGTCAAGTGGAG ATATTTATTTCTGTCCTCACTCTACCTACTGCAATGCTTTATATACCTGCTACCCTTATT GTGTATGTTATAAATGTAATTCCGGCCTCCGGGAGCATAATCTGAGACGGTCAGCTTTGT AAAACATAAATCAATTCAAGAGCTTGAGATGGC