Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0392700-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:13091133:13096726:-1 gene:Os10g0392700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Initiation factor 2 subunit family protein, expressed. (Os10t0392700-01);Similar to Initiation factor 2 subunit family protein, expressed. (Os10t0392700-02)
Sequence

GTAAAATTTCCGCACTGTTGTAGACAGCATATCTCTCTCGTTCCCCTTTTGCTCTCCGAA
AACCCTAACCCCTCGCCGCCGATCCGGCCCTCCTCCGCCGCTGGCCGCCATGCCGGACGT
GCAGCCGCTCGTCAGCGAGTTCGTCCTCAAGCTCAAGCGCCGCAAGGTGGAGGGGTCCCA
TGCCGTGGCGCGGCAGACGGCGTCGGGGAGCAGCTCATCGCCGCCAACCCCATCGAACTT
GCTGTTGGAAACATTGTGAGACGTGTTTTGCATATAATAAAAGAAGAGGATATATCTTCT
ACAGCAGTTGGTATTGAAGGCCTTTCTGTCACCGCTGAGAGCGATGATGAATATGACAGT
GGAAATGATGATCACCCTACCTTATCTGCTGCTGTCCTTGCTGCCCATGCTAGAAATGCC
CTTCGGGCACCTTCATTGCAGACACTTCTGGAAGATATTCCTGTGAGCACTGCGCTTTCA
CGTTCCGCATCGTCGGCTGGGGACTCTGATGGAAAATCTGGAGATAAGAGCTCAAAATCT
CGGAAACTCAAGCATGATGTTATTGCAGCCATTGGTGATCTAATTGATGAAATTGATACG
TGCTATGACCAGATCTCTGAGCAAGCCGTGGAACATATTCACCAGAATGAAGTAATTCTA
ACTCTAGGCCGCTCTAGAACGGTGAAAGAGTTTCTGTATGCTGCCAAAGAGAAAAAGCGA
TCTTTTCGTGTATTTGTTGCTGAAGGTGCTCCCAGATATAAGGGTCATGTTCTTGCAAAA
GAGCTGGTTGAGAAGGGTGTACAAACTACTGTTATAACAGACTCTGCAGTTTTTGCTATG
ATCTCCCGTGTTAACATGGTCATAGTTGGAGCCCATGCAATTATGGCAAATGGTGGAGTT
ATTGCACCAGTAGGAATGAACATGGTTGCTCTTGCTGCTCAAAGGCATGCTGTTCCCTTT
GTTGTGGTTGCTGGCAGTCACAAGGTTGATTTCTGTATACTGTGCATTTAA

Peptide Sequence

PEP ID

Os10t0392700-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:13091133:13096726:-1 gene:Os10g0392700 transcript:Os10t0392700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Initiation factor 2 subunit family protein, expressed. (Os10t0392700-01);Similar to Initiation factor 2 subunit family protein, expressed. (Os10t0392700-02)
Sequence

VKFPHCCRQHISLVPLLLSENPNPSPPIRPSSAAGRHAGRAAARQRVRPQAQAPQGGGVP
CRGAADGVGEQLIAANPIELAVGNIVRRVLHIIKEEDISSTAVGIEGLSVTAESDDEYDS
GNDDHPTLSAAVLAAHARNALRAPSLQTLLEDIPVSTALSRSASSAGDSDGKSGDKSSKS
RKLKHDVIAAIGDLIDEIDTCYDQISEQAVEHIHQNEVILTLGRSRTVKEFLYAAKEKKR
SFRVFVAEGAPRYKGHVLAKELVEKGVQTTVITDSAVFAMISRVNMVIVGAHAIMANGGV
IAPVGMNMVALAAQRHAVPFVVVAGSHKVDFCILCI

Transcript Sequence

Transcript ID

Os10t0392700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:13091133:13096726:-1 gene:Os10g0392700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Initiation factor 2 subunit family protein, expressed. (Os10t0392700-01);Similar to Initiation factor 2 subunit family protein, expressed. (Os10t0392700-02)
Sequence

GTAAAATTTCCGCACTGTTGTAGACAGCATATCTCTCTCGTTCCCCTTTTGCTCTCCGAA
AACCCTAACCCCTCGCCGCCGATCCGGCCCTCCTCCGCCGCTGGCCGCCATGCCGGACGT
GCAGCCGCTCGTCAGCGAGTTCGTCCTCAAGCTCAAGCGCCGCAAGGTGGAGGGGTCCCA
TGCCGTGGCGCGGCAGACGGCGTCGGGGAGCAGCTCATCGCCGCCAACCCCATCGAACTT
GCTGTTGGAAACATTGTGAGACGTGTTTTGCATATAATAAAAGAAGAGGATATATCTTCT
ACAGCAGTTGGTATTGAAGGCCTTTCTGTCACCGCTGAGAGCGATGATGAATATGACAGT
GGAAATGATGATCACCCTACCTTATCTGCTGCTGTCCTTGCTGCCCATGCTAGAAATGCC
CTTCGGGCACCTTCATTGCAGACACTTCTGGAAGATATTCCTGTGAGCACTGCGCTTTCA
CGTTCCGCATCGTCGGCTGGGGACTCTGATGGAAAATCTGGAGATAAGAGCTCAAAATCT
CGGAAACTCAAGCATGATGTTATTGCAGCCATTGGTGATCTAATTGATGAAATTGATACG
TGCTATGACCAGATCTCTGAGCAAGCCGTGGAACATATTCACCAGAATGAAGTAATTCTA
ACTCTAGGCCGCTCTAGAACGGTGAAAGAGTTTCTGTATGCTGCCAAAGAGAAAAAGCGA
TCTTTTCGTGTATTTGTTGCTGAAGGTGCTCCCAGATATAAGGGTCATGTTCTTGCAAAA
GAGCTGGTTGAGAAGGGTGTACAAACTACTGTTATAACAGACTCTGCAGTTTTTGCTATG
ATCTCCCGTGTTAACATGGTCATAGTTGGAGCCCATGCAATTATGGCAAATGGTGGAGTT
ATTGCACCAGTAGGAATGAACATGGTTGCTCTTGCTGCTCAAAGGCATGCTGTTCCCTTT
GTTGTGGTTGCTGGCAGTCACAAGGTTGATTTCTGTATACTGTGCATTTAATTATGACAT
CGATAACCAGAGGTTGCTTTCTGAGCAATTAAATACAACATATGTTCTATTTCTTGAAGG
CATAGATTATGTCATGCTGTCATTAGCCTGATATTATCATTCTGTGCATCTTATGTTATT
AACCCAAAATCATTTTTCTTTAGCTACTATTATTCCCACTTTATTATTTTTAGTACTTCT
TGTTTTGGCTCACATGGTTCGATTTCGGTTCATCTCCAGCCCACCCCAACTTGGGACTAA
AGGCTTAAGTTGTTATTGCTGTTGTTGTCATGTTATTACACTTGTCCCTATGTAGTATTA
GCTGGACAAAGTAGGCTCAATTGGTCATGATATAATGCAATCATTATACGATAGGATACC
AATTATGCTTTAACCAGATATTTCTACTTTATTAAATTCAACACAAAACATTTGTTATCA
CCTGCTGCTCCTCACAAATCCCCTAGTCACCTCTGCCTTAGACTCAAAGTATATGCTACC
AAGTCATTCATTCTTGTTGTTTATTTTAGTTCCGTGACAAGATACCTTGTCCTTGTGAGG
ATTAGCCCTGTGGCCTCTGAGTTGAAAATAGTGACCAGCATTTGACTGAGATCCCACTTA
TATGCTCAAGAGAAGTCATTTCTGCCTTCGAAGCTATAGATATTTTCTTAAGCGATTATT
CATTCATAACAAGAGCTGTTATTTGATGTTTGAACATTTGGGTCACCTGGTATCACTAAT
AATGATTTGAAACACTATATCTTTGGGTAGAAACTTAATAATATTTCTTCATTCACATCG
CAGCTATGTCCTTTGTATCCACACAACCCAGAGGTTTTACTGAATGAACTTAAATCACCA
TCTGATCTGCTCGACTTTGGCGAGTTCTCAAGTTGCATGAACTTCAGTACTCAGGATGGC
ACTCCTCTTCTGAATGTTGTCAATCCAACGTTTGACTATGTGCCACCAAAGCTTGTGAGC
CTTTTCATCACTGATACGGGAGGGCACAGTCCATCATACATGTACCGCCTTATCGCTGAG
TATTACTCAGCTGATGATTTGGTAGTGCGGCGGAAGTCGACATCTTCATAGAACAAAAAA
GGCGCACTAGAGTACTTTAGTATGTTGGCATTCTGAAGGTACAATCTAGGATGTACACAA
ATGCTGTTAGAGAGGTTGCTGTCCTCAATGGAATCAGCTGTTTTGATCTGGAAGTTGAAT
TCTGTAATTATTACCACCGAACCGCAACCAAGCATTTTGAGTGTAGACTGTTTGAGGCTA
TGGGCGTGACGGATGCCTGATTGGAACATGAATTGTATAAACTAGAGAAGGAAGCTACAT
ATGTGATGCAGGGTGTAAAGTGTGGATGTTTTCGAGTCCGTGCATCCTGTGATCTGCCGA
GTCCAAATTTTGTC