Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0392400-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:13069770:13070894:-1 gene:Os10g0392400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TIFY GENE 11D description:Tify domain containing protein. (Os10t0392400-01)
Sequence

ATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTAC
ATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAG
GAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCGCCGCCGCCGCCGAC
GGCGTCGCGACGCCGTCGGCGGGGACGGCCCCGCTGACCATCTTCTACGACGGGAGGATG
GTCGTGGTCGACGACGTCCCGGTCGAGAAGGCCGCGGAGCTCATGAGGCTGGCCGGCTCC
GCGTGCTCGCCGCCGCAGCCGGCGCACGCCGCCGCGCTCCCGGAGATGCCGATCGCGAGG
AAGGCGTCGCTGCAGCGTTTCCTCCAGAAGAGGAAGCACAGGATCACGACAACGAGCGAA
CCATACAAGAAGGCGGCGGTGGCGTCGCCGGCGCCGGAGAAAAGCTTCGCCGTCGCGCCG
GTGAAAGATGAGCCGGCGACATGGCTCGGGCTCTGA

Peptide Sequence

PEP ID

Os10t0392400-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:13069770:13070894:-1 gene:Os10g0392400 transcript:Os10t0392400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TIFY GENE 11D description:Tify domain containing protein. (Os10t0392400-01)
Sequence

MAAAGSSSRFAVTCGLLSQYMRERQQPQPPVTVLEAVAEEEEEEDARTMQLFPPRAAAAD
GVATPSAGTAPLTIFYDGRMVVVDDVPVEKAAELMRLAGSACSPPQPAHAAALPEMPIAR
KASLQRFLQKRKHRITTTSEPYKKAAVASPAPEKSFAVAPVKDEPATWLGL

Transcript Sequence

Transcript ID

Os10t0392400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:13069770:13070894:-1 gene:Os10g0392400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TIFY GENE 11D description:Tify domain containing protein. (Os10t0392400-01)
Sequence

ACACACACATCCCACCTCCCCACACGCAAGCTTCGCAGCGCAGCTTCGCGGAGACAACGT
GAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCG
GCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCC
AGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGG
ACGCGCGGACTATGCAGCTCTTCCCCCCGCGCGCCGCCGCCGCCGACGGCGTCGCGACGC
CGTCGGCGGGGACGGCCCCGCTGACCATCTTCTACGACGGGAGGATGGTCGTGGTCGACG
ACGTCCCGGTCGAGAAGGCCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGC
CGCAGCCGGCGCACGCCGCCGCGCTCCCGGAGATGCCGATCGCGAGGAAGGCGTCGCTGC
AGCGTTTCCTCCAGAAGAGGAAGCACAGGATCACGACAACGAGCGAACCATACAAGAAGG
CGGCGGTGGCGTCGCCGGCGCCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGC
CGGCGACATGGCTCGGGCTCTGAAGATTTATCTGCCCGGTTTAGAGGAGGAGAATATCAC
AAAGGGAGAAAAAAAATTAAGTACTGACTAAATTGTTGTTTTCCATGATTTAAGTTCGTC
TCTGTTTGAGATTTCTTTGGCCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTAT
TTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGT
TGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACT
CAAAAGACTGGAAAGACTGTTGTC