Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0390500-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:12968039:12974099:1 gene:Os10g0390500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALANINE AMINOTRANSFERASE description:Alanine aminotransferase, Starch synthesis in developing seeds (Os10t0390500-01)
Sequence	ATGGCTGCTCCCAGCGTCGCCGTCGACAACCTCAACCCCAAGGTTTTGAATTGTGAGTAT GCAGTGCGTGGAGAGATTGTGATCCATGCTCAGCGCCTGCAGCAACAGCTACAGACTCAA CCAGGGTCTCTTCCTTTTGATGAGATCCTATACTGCAACATTGGGAATCCCCAGTCTCTT GGTCAGAAGCCAGTTACATTCTTCAGGGAGGTTATTGCTCTTTGTGATCATCCATGCTTG TTGGAAAAGGAGGAAACCAAATCATTGTTCAGTGCTGATGCCATTTCTCGAGCAACAACA ATTCTTGCCTCGATTCCTGGAAGAGCAACTGGAGCATACAGCCACAGCCAGGGCATCAAA GGGCTGCGTGATGCAATTGCTGCTGGAATTGCATCACGTGACGGATACCCTGCAAATGCA GACGACATTTTCCTTACTGACGGAGCAAGCCCTGGAGTTCACATGATGATGCAGTTACTG ATAAGGAACGAGAAAGATGGCATTCTCTGCCCAATTCCTCAATATCCTTTGTACTCAGCC TCCATTGCTCTTCATGGTGGAGCTCTTGTCCCGTATTATCTTAATGAATCAACAGGCTGG GGTTTGGAGATCTCTGACCTTAAGAAGCAACTCGAAGATTCTCGGTTGAAAGGCATTGAT GTTAGGGCTTTGGTAGTTATCAATCCAGGAAATCCAACTGGGCAGGTTCTTGCTGAGGAA AACCAACGGGACATAGTGAAGTTCTGCAAAAATGAGGGACTTGTTCTTCTGGCTGATGAG GTGTACCAAGAGAACATCTATGTTGACAACAAGAAATTTAACTCTTTCAAGAAGATAGCG AGATCCATGGGATACAACGAGGATGATCTCCCTTTAGTATCATTTCAATCTGTTTCTAAG GGATATTATGGTGAATGTGGCAAAAGAGGAGGCTACATGGAGATTACTGGCTTCAGTGCT CCAGTTAGAGAGCAGATCTACAAAGTGGCGTCAGTGAACTTATGTTCCAATATCACTGGC CAGATCCTTGCCAGCCTCGTCATGAATCCACCAAAGGCTGGAGATGCATCATATGCTTCA TACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGGCATTGGAG AATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACTGAAGGAGCAATGTACCTC TTCCCTCAGCTTAGTCTGCCACAAAAGGCAATTGACGCTGCTAAAGCTGCTAACAAAGCA CCTGATGCTTTCTATGCCCTTCGTCTCCTCGAGGCAACCGGAATTGTTGTTGTCCCTGGA TCTGGATTTGGCCAAGTTCCTGGCACATGGCACATCAGATGCACAATCCTGCCACAGGAG GAGAAGATCCCCGCGATCATCTCCCGCTTCAAGGCATTCCATGAGGGCTTCATGGCAGCG TACCGCGACTGA

Peptide Sequence

PEP ID	Os10t0390500-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:12968039:12974099:1 gene:Os10g0390500 transcript:Os10t0390500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALANINE AMINOTRANSFERASE description:Alanine aminotransferase, Starch synthesis in developing seeds (Os10t0390500-01)
Sequence	MAAPSVAVDNLNPKVLNCEYAVRGEIVIHAQRLQQQLQTQPGSLPFDEILYCNIGNPQSL GQKPVTFFREVIALCDHPCLLEKEETKSLFSADAISRATTILASIPGRATGAYSHSQGIK GLRDAIAAGIASRDGYPANADDIFLTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSA SIALHGGALVPYYLNESTGWGLEISDLKKQLEDSRLKGIDVRALVVINPGNPTGQVLAEE NQRDIVKFCKNEGLVLLADEVYQENIYVDNKKFNSFKKIARSMGYNEDDLPLVSFQSVSK GYYGECGKRGGYMEITGFSAPVREQIYKVASVNLCSNITGQILASLVMNPPKAGDASYAS YKAEKDGILQSLARRAKALENAFNSLEGITCNKTEGAMYLFPQLSLPQKAIDAAKAANKA PDAFYALRLLEATGIVVVPGSGFGQVPGTWHIRCTILPQEEKIPAIISRFKAFHEGFMAA YRD

Transcript Sequence

Transcript ID	Os10t0390500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:12968039:12974099:1 gene:Os10g0390500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALANINE AMINOTRANSFERASE description:Alanine aminotransferase, Starch synthesis in developing seeds (Os10t0390500-01)
Sequence	GAAACCCAACCCGTCAACGCTGCCGCTGAATCTCACTTTCTCTCTCTGTTCTTGGTGCTT CCGCCGCCATGGCTGCTCCCAGCGTCGCCGTCGACAACCTCAACCCCAAGGTTTTGAATT GTGAGTATGCAGTGCGTGGAGAGATTGTGATCCATGCTCAGCGCCTGCAGCAACAGCTAC AGACTCAACCAGGGTCTCTTCCTTTTGATGAGATCCTATACTGCAACATTGGGAATCCCC AGTCTCTTGGTCAGAAGCCAGTTACATTCTTCAGGGAGGTTATTGCTCTTTGTGATCATC CATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGTGCTGATGCCATTTCTCGAG CAACAACAATTCTTGCCTCGATTCCTGGAAGAGCAACTGGAGCATACAGCCACAGCCAGG GCATCAAAGGGCTGCGTGATGCAATTGCTGCTGGAATTGCATCACGTGACGGATACCCTG CAAATGCAGACGACATTTTCCTTACTGACGGAGCAAGCCCTGGAGTTCACATGATGATGC AGTTACTGATAAGGAACGAGAAAGATGGCATTCTCTGCCCAATTCCTCAATATCCTTTGT ACTCAGCCTCCATTGCTCTTCATGGTGGAGCTCTTGTCCCGTATTATCTTAATGAATCAA CAGGCTGGGGTTTGGAGATCTCTGACCTTAAGAAGCAACTCGAAGATTCTCGGTTGAAAG GCATTGATGTTAGGGCTTTGGTAGTTATCAATCCAGGAAATCCAACTGGGCAGGTTCTTG CTGAGGAAAACCAACGGGACATAGTGAAGTTCTGCAAAAATGAGGGACTTGTTCTTCTGG CTGATGAGGTGTACCAAGAGAACATCTATGTTGACAACAAGAAATTTAACTCTTTCAAGA AGATAGCGAGATCCATGGGATACAACGAGGATGATCTCCCTTTAGTATCATTTCAATCTG TTTCTAAGGGATATTATGGTGAATGTGGCAAAAGAGGAGGCTACATGGAGATTACTGGCT TCAGTGCTCCAGTTAGAGAGCAGATCTACAAAGTGGCGTCAGTGAACTTATGTTCCAATA TCACTGGCCAGATCCTTGCCAGCCTCGTCATGAATCCACCAAAGGCTGGAGATGCATCAT ATGCTTCATACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGG CATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACTGAAGGAGCAA TGTACCTCTTCCCTCAGCTTAGTCTGCCACAAAAGGCAATTGACGCTGCTAAAGCTGCTA ACAAAGCACCTGATGCTTTCTATGCCCTTCGTCTCCTCGAGGCAACCGGAATTGTTGTTG TCCCTGGATCTGGATTTGGCCAAGTTCCTGGCACATGGCACATCAGATGCACAATCCTGC CACAGGAGGAGAAGATCCCCGCGATCATCTCCCGCTTCAAGGCATTCCATGAGGGCTTCA TGGCAGCGTACCGCGACTGAATTGCCATTCACCATTGAACAGATGGGGAGTTCTATACAA GCCTGATGGATTTTCCCCAGGCCTTCTTTTTTTTTGTCCCCATGATAGCATCATCGTGTA GACCAAAACAAAATAAATCAAAGCCAGACATGCTTTTTTTTAGTGTGCTAATCACAGAGG GTACTGAAAAACTGATGCCTTCGATGGCAAATTGAGGAGAAATTTACCTGCCATTTCGTT GTTGTGCCTGTTACTGTATAAATGTTAAGATTTTGGTGCAGAGGCAGCTATAGTTTTGAG A