Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0359200-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:11026529:11027829:1 gene:Os10g0359200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UPF0496 protein 1. (Os10t0359200-00)
Sequence

ATGGGGAATCGTCACGGCATTATGCGGCCACGGCGGCTGGCGAGTGGGCGGTCGGCGGCG
GAGGAGGAGGAGGACGGGGAGGGGGAACCTGGGTCGTACGAGGCGGCGTGCAGCGCGGAC
CCGGAGCTGGGGACGTTCGACACGGCGCTGCGGCGGCGGGCGAGCCGCGCCATCACCGCG
GTGGCGTCCGGGGTGGAGGTGCGGTCGCTGTCGCTGGGCTCGCTCCGGGAGGTCACCGGC
TGCCTGCTCGACATGAACCAGGAGGTGGTCCGCGTCGTGCTCGACTGCAAGCGCGACGTG
TGGCGGAGCCCCGACCTGTTCGACCTCGTCGAGGACTACTTCGAGGGCAGCCTCCACACC
CTCGACTTCCTCGCCGCGCTCGACAAGTCCCTCCACCGTGCCCGCGACTCCCAGCTCGTC
CTCCACCTCGCCCTCCAGCGCCACCACCACGAACCCCCCGCCGCGGCGTCGGCGTCGGAG
CTGTACGCGAGCACGCTCGGCGAGCTGCGCCAGTTCAAGGCGGCCGGCGAGCCGTTCACG
GACGAGTTCTTCGCCGCGTTCCAGACCGTGTACCGGCAGCAGATGTCCATGGTGGGCAAG
CTCCGGCGCCGGAAGCGCCGCCTGGACCGCCGCCTCCGCTCCGTCCGCGTGTGGCGCCGC
GTCTCCGGCATCGTCTTCCTCACCTCCTTTGCCGCGCTGCTCGTCTGCTCGGTCGTCGCC
GCGGCCATCGCCGCGCCGCCCGTCGCGGCCGCGCTCGCCGCCGCGGCATCCATGCCGGTG
GGCTCCGCGGGGAAATGGATGGACTCGCTGCTAAAGAAATACCAGGACGCGCTCCATGGA
CACAAGGAGGTGGTGAGCGCAATGCAGGTGGGCACCTTCATCGCCATCAAGGACCTTGAC
AGCATCAGGGTGCTCGTCGAACACCTTGAGGTTCAGATCAGCTCCATGGCCGATTCCGTG
GAGTTCGCAGAGCGCGACGAGGAGGCGGTGAGGTTCGGCATAGATGAGGTCAAGAAGAAG
CTGGAATTGTTCATGAAGAGTGTGGATGATCTGGGAGAGCAGGCAGACCGGTGTAGCCGG
GACATCCGCCGCGCGAGGACCGTCGTGCTGCAAAGGATCATCCACCATCCTAACTGA

Peptide Sequence

PEP ID

Os10t0359200-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:11026529:11027829:1 gene:Os10g0359200 transcript:Os10t0359200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UPF0496 protein 1. (Os10t0359200-00)
Sequence

MGNRHGIMRPRRLASGRSAAEEEEDGEGEPGSYEAACSADPELGTFDTALRRRASRAITA
VASGVEVRSLSLGSLREVTGCLLDMNQEVVRVVLDCKRDVWRSPDLFDLVEDYFEGSLHT
LDFLAALDKSLHRARDSQLVLHLALQRHHHEPPAAASASELYASTLGELRQFKAAGEPFT
DEFFAAFQTVYRQQMSMVGKLRRRKRRLDRRLRSVRVWRRVSGIVFLTSFAALLVCSVVA
AAIAAPPVAAALAAAASMPVGSAGKWMDSLLKKYQDALHGHKEVVSAMQVGTFIAIKDLD
SIRVLVEHLEVQISSMADSVEFAERDEEAVRFGIDEVKKKLELFMKSVDDLGEQADRCSR
DIRRARTVVLQRIIHHPN

Transcript Sequence

Transcript ID

Os10t0359200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:11026529:11027829:1 gene:Os10g0359200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UPF0496 protein 1. (Os10t0359200-00)
Sequence

GCTATCTTGGCTTCGCCGGCGATGGGGAATCGTCACGGCATTATGCGGCCACGGCGGCTG
GCGAGTGGGCGGTCGGCGGCGGAGGAGGAGGAGGACGGGGAGGGGGAACCTGGGTCGTAC
GAGGCGGCGTGCAGCGCGGACCCGGAGCTGGGGACGTTCGACACGGCGCTGCGGCGGCGG
GCGAGCCGCGCCATCACCGCGGTGGCGTCCGGGGTGGAGGTGCGGTCGCTGTCGCTGGGC
TCGCTCCGGGAGGTCACCGGCTGCCTGCTCGACATGAACCAGGAGGTGGTCCGCGTCGTG
CTCGACTGCAAGCGCGACGTGTGGCGGAGCCCCGACCTGTTCGACCTCGTCGAGGACTAC
TTCGAGGGCAGCCTCCACACCCTCGACTTCCTCGCCGCGCTCGACAAGTCCCTCCACCGT
GCCCGCGACTCCCAGCTCGTCCTCCACCTCGCCCTCCAGCGCCACCACCACGAACCCCCC
GCCGCGGCGTCGGCGTCGGAGCTGTACGCGAGCACGCTCGGCGAGCTGCGCCAGTTCAAG
GCGGCCGGCGAGCCGTTCACGGACGAGTTCTTCGCCGCGTTCCAGACCGTGTACCGGCAG
CAGATGTCCATGGTGGGCAAGCTCCGGCGCCGGAAGCGCCGCCTGGACCGCCGCCTCCGC
TCCGTCCGCGTGTGGCGCCGCGTCTCCGGCATCGTCTTCCTCACCTCCTTTGCCGCGCTG
CTCGTCTGCTCGGTCGTCGCCGCGGCCATCGCCGCGCCGCCCGTCGCGGCCGCGCTCGCC
GCCGCGGCATCCATGCCGGTGGGCTCCGCGGGGAAATGGATGGACTCGCTGCTAAAGAAA
TACCAGGACGCGCTCCATGGACACAAGGAGGTGGTGAGCGCAATGCAGGTGGGCACCTTC
ATCGCCATCAAGGACCTTGACAGCATCAGGGTGCTCGTCGAACACCTTGAGGTTCAGATC
AGCTCCATGGCCGATTCCGTGGAGTTCGCAGAGCGCGACGAGGAGGCGGTGAGGTTCGGC
ATAGATGAGGTCAAGAAGAAGCTGGAATTGTTCATGAAGAGTGTGGATGATCTGGGAGAG
CAGGCAGACCGGTGTAGCCGGGACATCCGCCGCGCGAGGACCGTCGTGCTGCAAAGGATC
ATCCACCATCCTAACTGACCCTTGGGGAGCAGAGTTCAAGATTGCGAGGTATTGCTCATT
GTTGTGATGCAATTCATGTTGTTAAATTGTGATAGATGTACATATGAGGTGCACTTTGCT
GAAATTTTGGAGCAAGTGAAATTGATATTGACTATTACTCT