Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0340600-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:10012073:10017326:-1 gene:Os10g0340600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-GALACTOSIDASE 14 description:Similar to Beta-galactosidase. (Os10t0340600-01)
Sequence

ATGGCAAAGGCAATGTGCAGCTTGGGCGCCTGCCTGGCGGTGATGCTGGTCGTCCTCGCG
GCGGCGGTCGCCGGCGTCGGCTGCAGCATCGTCTCCTACGACGGCCGGAGCCTCATCCTC
GACGGCGAGCGCCGCATCGTCATCTCTGGCTCCATTCACTACCCCAGGAGCACCCCCGAG
ATGTGGCCCGATTTGATCAAGAAGGCCAAGGAAGGCGGCCTCAATGCTATCGAGACATAT
GTGTTCTGGAATGGCCATGAGCCGCGCCGTCGTGAGTTCAACTTTGAGGGGAACTACGAT
GTCGTTAGGTTCTTCAAGGAGATCCAAAACGCCGGAATGTACGCTATTCTTCGTATCGGC
CCATACATCTGTGGTGAATGGAACTACGGAGGTCTTCCCGTTTGGTTGCGTGATATCCCT
GGAATAAAGTTTAGGCTGCATAACAAGCCTTTTGAGAATGGAATGGAGGCCTTCACTACA
CTTATAGTTAAGAAGATGAAGGATGCAAACATGTTCGCGGGGCAAGGAGGCCCAATCATC
CTTGCTCAGATTGAGAATGAGTATGGTTATACCATGTTGCAACCGGAAAATATCCAGTCT
GCGCACGAATACATCCACTGGTGTGCGGACATGGCAAATAAGCAGAATGTTGGGGTCCCA
TGGATCATGTGCCAGCAAGACAATGATGTGCCACCGAATGTGGTCAACACCTGTAATGGA
TTCTATTGCCATGAGTGGTTTTCAAACAGGACAAGCATCCCTAAAATGTGGACAGAGAAC
TGGACTGGCTGGTACAGAGATTGGGATCAGCCCGAATTTCGTAGGCCTACTGAAGACATT
GCTTTTGCAGTTGCGATGTTCTTCCAGATGCGTGGTTCACTACAGAACTACTACATGTAC
CATGGTGGTACCAACTTTGGCCGCACTGCAGGAGGCCCATATATTACAACAAGCTATGAT
TATGATGCTCCCTTGGATGAGTATGGTAATCTTAGGCAGCCTAAATATGGCCACTTGAAG
GAGCTCCACTCTGTGCTCATGTCTATGGAGAAGATTCTTCTCCATGGAGATTACATTGAC
ACCAATTACGGTGATAATGTCACGGTCACCAAGTACACCTTAAATGCCACCTCTGCTTGT
TTCATCAACAACCGGTTTGATGATAGGGATGTCAATGTTACTCTTGATGGAACCACTCAC
TTCTTGCCTGCTTGGTCTGTTAGCATCTTACCGAATTGCAAGACTGTTGCCTTTAATAGC
GCAAAGATCAAGACGCAGACGACTGTGATGGTAAACAAGACAAGCATGGTGGAGCAGCAA
ACAGAGCACTTCAAATGGTCATGGATGCCAGAGAACTTGAGGCCCTTCATGACCGATGAA
AAGGGCAACTTTAGAAAGAATGAGCTTTTGGAGCAGATCGTGACGACAACCGACCAGAGC
GATTATTTGTGGTATAGAACAAGCCTTGAACACAAGGGGGAGGGGAGCTACGTGCTATAC
GTGAACACAACTGGCCATGAACTCTACGCATTTGTGAATGGAAAGCTTGTCGGTCAACAA
TATTCTCCCAATGAGAATTTTACCTTCCAACTCAAGTCACCGGTAAAGCTTCATGATGGC
AAGAACTATATTTCTCTTCTGAGCGGGACAGTTGGTCTAAGGAACTATGGTGGCTCATTT
GAGCTGCTTCCTGCTGGAATTGTTGGAGGCCCAGTTAAACTTATTGACAGCAGTGGTTCT
GCGATTGATCTCTCCAACAACTCCTGGTCTTACAAGGCTGGTTTGGCTGGTGAGTACAGG
AAGATCTATCTTGACAAGCCAGGCAACAAATGGCGCAGCCATAACAGCACCATTCCTATC
AACAGGCCCTTCACCTGGTACAAGACCACGTTCCAAGCCCCTGCCGGCGAAGACTCTGTG
GTGGTGGACCTCCATGGGCTAAACAAGGGTGTGGCATGGGTGAATGGAAACAGCCTCGGA
CGCTACTGGCCATCGTACGTTGCAGCAGACATGCCCGGCTGCCACCACTGCGACTACCGT
GGCGTGTTCAAGGCAGAGGTTGAAGCCCAAAAGTGCCTCACGGGTTGCGGAGAACCCTCG
CAACAGCTCTACCATGTGCCACGCTCCTTCCTCAACAAAGGGGAGCCCAACACACTCATC
CTCTTCGAGGAAGCCGGCGGCGACCCGTCGGAGGTGGCGGTCCGCACCGTGGTGGAGGGT
TCCGTGTGTGCGTCTGCCGAGGTTGGTGACACTGTCACGCTGTCGTGTGGCGCGCATGGC
AGGACCATTTCGAGTGTTGATGTGGCTAGCTTCGGTGTGGCACGTGGCCGGTGCGGATCC
TACGACGGCGGGTGCGAGTCGAAGGTGGCTTATGACGCATTTGCGGCCGCGTGCGTTGGG
AAGGAGTCGTGCACGGTGCTTGTCACCGATGCGTTTGCCAATGCTGGTTGTGTCTCTGGT
GTGCTCACTGTCCAGGCCACTTGCTGA

Peptide Sequence

PEP ID

Os10t0340600-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:10012073:10017326:-1 gene:Os10g0340600 transcript:Os10t0340600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-GALACTOSIDASE 14 description:Similar to Beta-galactosidase. (Os10t0340600-01)
Sequence

MAKAMCSLGACLAVMLVVLAAAVAGVGCSIVSYDGRSLILDGERRIVISGSIHYPRSTPE
MWPDLIKKAKEGGLNAIETYVFWNGHEPRRREFNFEGNYDVVRFFKEIQNAGMYAILRIG
PYICGEWNYGGLPVWLRDIPGIKFRLHNKPFENGMEAFTTLIVKKMKDANMFAGQGGPII
LAQIENEYGYTMLQPENIQSAHEYIHWCADMANKQNVGVPWIMCQQDNDVPPNVVNTCNG
FYCHEWFSNRTSIPKMWTENWTGWYRDWDQPEFRRPTEDIAFAVAMFFQMRGSLQNYYMY
HGGTNFGRTAGGPYITTSYDYDAPLDEYGNLRQPKYGHLKELHSVLMSMEKILLHGDYID
TNYGDNVTVTKYTLNATSACFINNRFDDRDVNVTLDGTTHFLPAWSVSILPNCKTVAFNS
AKIKTQTTVMVNKTSMVEQQTEHFKWSWMPENLRPFMTDEKGNFRKNELLEQIVTTTDQS
DYLWYRTSLEHKGEGSYVLYVNTTGHELYAFVNGKLVGQQYSPNENFTFQLKSPVKLHDG
KNYISLLSGTVGLRNYGGSFELLPAGIVGGPVKLIDSSGSAIDLSNNSWSYKAGLAGEYR
KIYLDKPGNKWRSHNSTIPINRPFTWYKTTFQAPAGEDSVVVDLHGLNKGVAWVNGNSLG
RYWPSYVAADMPGCHHCDYRGVFKAEVEAQKCLTGCGEPSQQLYHVPRSFLNKGEPNTLI
LFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGAHGRTISSVDVASFGVARGRCGS
YDGGCESKVAYDAFAAACVGKESCTVLVTDAFANAGCVSGVLTVQATC

Transcript Sequence

Transcript ID

Os10t0340600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:10012073:10017326:-1 gene:Os10g0340600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-GALACTOSIDASE 14 description:Similar to Beta-galactosidase. (Os10t0340600-01)
Sequence

TAACCTTGCTCCCCTTTACTCTGCCGTTTTAGAAGAACGACAACATAAGCTAGCGGCTGC
TCTGCATATACGCCATGGCAAAGGCAATGTGCAGCTTGGGCGCCTGCCTGGCGGTGATGC
TGGTCGTCCTCGCGGCGGCGGTCGCCGGCGTCGGCTGCAGCATCGTCTCCTACGACGGCC
GGAGCCTCATCCTCGACGGCGAGCGCCGCATCGTCATCTCTGGCTCCATTCACTACCCCA
GGAGCACCCCCGAGATGTGGCCCGATTTGATCAAGAAGGCCAAGGAAGGCGGCCTCAATG
CTATCGAGACATATGTGTTCTGGAATGGCCATGAGCCGCGCCGTCGTGAGTTCAACTTTG
AGGGGAACTACGATGTCGTTAGGTTCTTCAAGGAGATCCAAAACGCCGGAATGTACGCTA
TTCTTCGTATCGGCCCATACATCTGTGGTGAATGGAACTACGGAGGTCTTCCCGTTTGGT
TGCGTGATATCCCTGGAATAAAGTTTAGGCTGCATAACAAGCCTTTTGAGAATGGAATGG
AGGCCTTCACTACACTTATAGTTAAGAAGATGAAGGATGCAAACATGTTCGCGGGGCAAG
GAGGCCCAATCATCCTTGCTCAGATTGAGAATGAGTATGGTTATACCATGTTGCAACCGG
AAAATATCCAGTCTGCGCACGAATACATCCACTGGTGTGCGGACATGGCAAATAAGCAGA
ATGTTGGGGTCCCATGGATCATGTGCCAGCAAGACAATGATGTGCCACCGAATGTGGTCA
ACACCTGTAATGGATTCTATTGCCATGAGTGGTTTTCAAACAGGACAAGCATCCCTAAAA
TGTGGACAGAGAACTGGACTGGCTGGTACAGAGATTGGGATCAGCCCGAATTTCGTAGGC
CTACTGAAGACATTGCTTTTGCAGTTGCGATGTTCTTCCAGATGCGTGGTTCACTACAGA
ACTACTACATGTACCATGGTGGTACCAACTTTGGCCGCACTGCAGGAGGCCCATATATTA
CAACAAGCTATGATTATGATGCTCCCTTGGATGAGTATGGTAATCTTAGGCAGCCTAAAT
ATGGCCACTTGAAGGAGCTCCACTCTGTGCTCATGTCTATGGAGAAGATTCTTCTCCATG
GAGATTACATTGACACCAATTACGGTGATAATGTCACGGTCACCAAGTACACCTTAAATG
CCACCTCTGCTTGTTTCATCAACAACCGGTTTGATGATAGGGATGTCAATGTTACTCTTG
ATGGAACCACTCACTTCTTGCCTGCTTGGTCTGTTAGCATCTTACCGAATTGCAAGACTG
TTGCCTTTAATAGCGCAAAGATCAAGACGCAGACGACTGTGATGGTAAACAAGACAAGCA
TGGTGGAGCAGCAAACAGAGCACTTCAAATGGTCATGGATGCCAGAGAACTTGAGGCCCT
TCATGACCGATGAAAAGGGCAACTTTAGAAAGAATGAGCTTTTGGAGCAGATCGTGACGA
CAACCGACCAGAGCGATTATTTGTGGTATAGAACAAGCCTTGAACACAAGGGGGAGGGGA
GCTACGTGCTATACGTGAACACAACTGGCCATGAACTCTACGCATTTGTGAATGGAAAGC
TTGTCGGTCAACAATATTCTCCCAATGAGAATTTTACCTTCCAACTCAAGTCACCGGTAA
AGCTTCATGATGGCAAGAACTATATTTCTCTTCTGAGCGGGACAGTTGGTCTAAGGAACT
ATGGTGGCTCATTTGAGCTGCTTCCTGCTGGAATTGTTGGAGGCCCAGTTAAACTTATTG
ACAGCAGTGGTTCTGCGATTGATCTCTCCAACAACTCCTGGTCTTACAAGGCTGGTTTGG
CTGGTGAGTACAGGAAGATCTATCTTGACAAGCCAGGCAACAAATGGCGCAGCCATAACA
GCACCATTCCTATCAACAGGCCCTTCACCTGGTACAAGACCACGTTCCAAGCCCCTGCCG
GCGAAGACTCTGTGGTGGTGGACCTCCATGGGCTAAACAAGGGTGTGGCATGGGTGAATG
GAAACAGCCTCGGACGCTACTGGCCATCGTACGTTGCAGCAGACATGCCCGGCTGCCACC
ACTGCGACTACCGTGGCGTGTTCAAGGCAGAGGTTGAAGCCCAAAAGTGCCTCACGGGTT
GCGGAGAACCCTCGCAACAGCTCTACCATGTGCCACGCTCCTTCCTCAACAAAGGGGAGC
CCAACACACTCATCCTCTTCGAGGAAGCCGGCGGCGACCCGTCGGAGGTGGCGGTCCGCA
CCGTGGTGGAGGGTTCCGTGTGTGCGTCTGCCGAGGTTGGTGACACTGTCACGCTGTCGT
GTGGCGCGCATGGCAGGACCATTTCGAGTGTTGATGTGGCTAGCTTCGGTGTGGCACGTG
GCCGGTGCGGATCCTACGACGGCGGGTGCGAGTCGAAGGTGGCTTATGACGCATTTGCGG
CCGCGTGCGTTGGGAAGGAGTCGTGCACGGTGCTTGTCACCGATGCGTTTGCCAATGCTG
GTTGTGTCTCTGGTGTGCTCACTGTCCAGGCCACTTGCTGAGAAAAATCAGTGAATTGAC
CACGTCCTGGATAGTTGCTCAATAGGTTGGTTTGTTTAGGATAATAAGCTATAGGTTAAC
ATTCTTTTTGGTATCAGATCGTGGAAGACTTTTTTCCTTCATTTTACTTTTTATGTTGAT
TTTATGAGATACCGCACTGTCGATTCAATCAATTAAACTTTATAAAATCCGCAATGAAAG
GCTTTGTCC