Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0328700-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:9213110:9215332:1 gene:Os10g0328700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os10t0328700-01)
Sequence

ATGCTGCCGACCCCCCGCCGCGTCAAGAACAAAGCACCGGCGCCCGTGCAGCTCACGGCC
GAGCATCTCATCCGTGAGGCCCGCGAACTGCACGGCGATGGATCGGTGACCGTCTGCCTG
CCGGCGGAGTCCAAGAAGAGGAGGATCGTCGATGCCGACGAGCTCGCCGAGCACCGGCTC
GAGCGACGCGCACGGTTCGAGGCCATCGTCCGCCGAGCCGGCAGCGGTCGCGGAGGATGC
GGCGACGCGTCGTCGGAGTGGATGAGGTACGCGCGGTGGGAGGAGTCCCCCGGCGGCGGC
GGCGGCGACCCCGCCCGCGCGCGATCCGTGTACGAGCGCGCGCTGGCCGGCGGCGCGCCG
GCGTACCGCGACCATGGTGTGTGGATAAAGTATGCGCAGTTCGAGGCTCGTGGCGGCCGC
GTCGGGCACGCGCGCAACGTACTTGACCGCGCCGTGGCGATCCTCCCGCGCGCTGACCGC
ATCTGGTCGGAGTACCTCCGCATGGAGGATCTCCTCGGCGCCACAGACAACGCCCGCGTA
GTGTTCGATAGGTGGACGTCTTGGCGCCCCGGCGCCGATGCCTGGGCCGCGTACGCCGCG
TTCGAGCTCCGCCACGGCGAGCTGGACCGTGCCAGAGCCGTGCACGAGCGGCATGTTGCT
GCTCTCCCGTGCGCCGACGCGTTCATCCTTTTCGCCGAGTTCGAGACGAAACTGAAGAAC
CTGGACCGCGCGCCCCGCGTGTACGAGCACGCCGGGAGCCTGCTCGCCGCCGCCGGCGAC
AACGACGACACCGCCGTGCTGCTCGCCGCGTTCGCCGACTTCGAGGAGCGGTGCGGGGAG
CCGGACCGAGCGCGTGCAATATACCAGCACGCGCTCCGTGGCGAGCCGCCCGAGCCCCGC
GCCGAGGAGCTGCGCGAGAAGCTCCTCTCTCTCGAGAAGCGGTTCGGCGACCGCCATGGC
GTCGAGGACAGCATCGTCACCAAGCGGAGGTCCCAGTACGAGCGCGCGGTGACCACGAAC
CCGCTGTGCTACGACGCGTGGTTCGACCTCATCAGGCTGGAGGAGAGCGCCAACACCGGC
GACGCGAACCGGATCAGGGACCTCTACAGGCGCGCCGTCGCCAACGTTCCACCGGCGGCG
GCGGCGGCGGAGAAGCGGCATTGGCGGCGGTACATCTACCTCTGGATCAACTACGCCCTC
TTCGAGGAGCTCGACGCGGAGGACGTGGCGCGCGCCCGCGGCGTGTACCGGGAGTGCCTC
AGGACGATCCCACACAAGAAGTTCTCCTTCTCCAATATCTGCGTCATGGCGGCGGAGCTC
GAGATCCGTGACAAGAACCTCGCCGCGGCGCGGCGGCTCCTCGGCAACGCGATCGGCGTC
GCGCCCCGGCCGAAGCTATCCAGGAGGTACATCGAGATCGAGCTCCAGCTCGGCAACGTC
GGCCGGTGCCGGATTCTGTCCCAGAAGTTCATCGAGCACGCTCCGAGCAGCAGCCACGTA
TGGAGAAGCTACGCCGCGTTGGAGAAGAAGCTGGGCGAGACCGACCGCGCCCGATCCGTA
TACGACCTCGCCGTCTCTCAGCCGGCGCTGGACGCCCCGGAGCTAGTGTGGACGGACTAC
ATCCAGTTCGAGATCGACGCCGGCGAGCTCGACAGAGCGAGGCAGCTCTACGAGAGGCTT
CTCGGCAAAACACAACACCTCAACGTGTGGGTGAGCTACGCCGAGTTCGAGGCCACGGCG
TGCTCCGGCGGCGCCGCCATCGCCGGGAACGCGGCGGAGAAGGCCGAGCGGGTCCGGAGG
TGCCGCGCCGTATGCCGAAGAGCGGACGAACACTTCAGGGGATGCGCTGATGATCCCGCC
ATGAAGGAGGCAAGGGCGATGCTTCTCCAACAATGGCTGGCGAAGGAGGCCGCGTTCGGC
GACCTCGGAGAGGTGGAGCCGGTCGAGAAGAAGACGCCGAGAAGGGTGAAGAGGAAGAGG
AGTCTCCTCGCCGACGGCAATGGCGGAGGAGGAGGATGCGAGGAGTTCTTCGATTACATT
TTTGGTGATGAAGAGGATGCAACGGCAGCAGCTGGCTTCAAACTGATGAAAGCTGCTTAC
GAATGGAAGAACAGTGGCCATGTTATTACTTATTAG

Peptide Sequence

PEP ID

Os10t0328700-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:9213110:9215332:1 gene:Os10g0328700 transcript:Os10t0328700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os10t0328700-01)
Sequence

MLPTPRRVKNKAPAPVQLTAEHLIREARELHGDGSVTVCLPAESKKRRIVDADELAEHRL
ERRARFEAIVRRAGSGRGGCGDASSEWMRYARWEESPGGGGGDPARARSVYERALAGGAP
AYRDHGVWIKYAQFEARGGRVGHARNVLDRAVAILPRADRIWSEYLRMEDLLGATDNARV
VFDRWTSWRPGADAWAAYAAFELRHGELDRARAVHERHVAALPCADAFILFAEFETKLKN
LDRAPRVYEHAGSLLAAAGDNDDTAVLLAAFADFEERCGEPDRARAIYQHALRGEPPEPR
AEELREKLLSLEKRFGDRHGVEDSIVTKRRSQYERAVTTNPLCYDAWFDLIRLEESANTG
DANRIRDLYRRAVANVPPAAAAAEKRHWRRYIYLWINYALFEELDAEDVARARGVYRECL
RTIPHKKFSFSNICVMAAELEIRDKNLAAARRLLGNAIGVAPRPKLSRRYIEIELQLGNV
GRCRILSQKFIEHAPSSSHVWRSYAALEKKLGETDRARSVYDLAVSQPALDAPELVWTDY
IQFEIDAGELDRARQLYERLLGKTQHLNVWVSYAEFEATACSGGAAIAGNAAEKAERVRR
CRAVCRRADEHFRGCADDPAMKEARAMLLQQWLAKEAAFGDLGEVEPVEKKTPRRVKRKR
SLLADGNGGGGGCEEFFDYIFGDEEDATAAAGFKLMKAAYEWKNSGHVITY

Transcript Sequence

Transcript ID

Os10t0328700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:9213110:9215332:1 gene:Os10g0328700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os10t0328700-01)
Sequence

TATCCAGTTCCAGTTATTGGCGATGCTGCCGACCCCCCGCCGCGTCAAGAACAAAGCACC
GGCGCCCGTGCAGCTCACGGCCGAGCATCTCATCCGTGAGGCCCGCGAACTGCACGGCGA
TGGATCGGTGACCGTCTGCCTGCCGGCGGAGTCCAAGAAGAGGAGGATCGTCGATGCCGA
CGAGCTCGCCGAGCACCGGCTCGAGCGACGCGCACGGTTCGAGGCCATCGTCCGCCGAGC
CGGCAGCGGTCGCGGAGGATGCGGCGACGCGTCGTCGGAGTGGATGAGGTACGCGCGGTG
GGAGGAGTCCCCCGGCGGCGGCGGCGGCGACCCCGCCCGCGCGCGATCCGTGTACGAGCG
CGCGCTGGCCGGCGGCGCGCCGGCGTACCGCGACCATGGTGTGTGGATAAAGTATGCGCA
GTTCGAGGCTCGTGGCGGCCGCGTCGGGCACGCGCGCAACGTACTTGACCGCGCCGTGGC
GATCCTCCCGCGCGCTGACCGCATCTGGTCGGAGTACCTCCGCATGGAGGATCTCCTCGG
CGCCACAGACAACGCCCGCGTAGTGTTCGATAGGTGGACGTCTTGGCGCCCCGGCGCCGA
TGCCTGGGCCGCGTACGCCGCGTTCGAGCTCCGCCACGGCGAGCTGGACCGTGCCAGAGC
CGTGCACGAGCGGCATGTTGCTGCTCTCCCGTGCGCCGACGCGTTCATCCTTTTCGCCGA
GTTCGAGACGAAACTGAAGAACCTGGACCGCGCGCCCCGCGTGTACGAGCACGCCGGGAG
CCTGCTCGCCGCCGCCGGCGACAACGACGACACCGCCGTGCTGCTCGCCGCGTTCGCCGA
CTTCGAGGAGCGGTGCGGGGAGCCGGACCGAGCGCGTGCAATATACCAGCACGCGCTCCG
TGGCGAGCCGCCCGAGCCCCGCGCCGAGGAGCTGCGCGAGAAGCTCCTCTCTCTCGAGAA
GCGGTTCGGCGACCGCCATGGCGTCGAGGACAGCATCGTCACCAAGCGGAGGTCCCAGTA
CGAGCGCGCGGTGACCACGAACCCGCTGTGCTACGACGCGTGGTTCGACCTCATCAGGCT
GGAGGAGAGCGCCAACACCGGCGACGCGAACCGGATCAGGGACCTCTACAGGCGCGCCGT
CGCCAACGTTCCACCGGCGGCGGCGGCGGCGGAGAAGCGGCATTGGCGGCGGTACATCTA
CCTCTGGATCAACTACGCCCTCTTCGAGGAGCTCGACGCGGAGGACGTGGCGCGCGCCCG
CGGCGTGTACCGGGAGTGCCTCAGGACGATCCCACACAAGAAGTTCTCCTTCTCCAATAT
CTGCGTCATGGCGGCGGAGCTCGAGATCCGTGACAAGAACCTCGCCGCGGCGCGGCGGCT
CCTCGGCAACGCGATCGGCGTCGCGCCCCGGCCGAAGCTATCCAGGAGGTACATCGAGAT
CGAGCTCCAGCTCGGCAACGTCGGCCGGTGCCGGATTCTGTCCCAGAAGTTCATCGAGCA
CGCTCCGAGCAGCAGCCACGTATGGAGAAGCTACGCCGCGTTGGAGAAGAAGCTGGGCGA
GACCGACCGCGCCCGATCCGTATACGACCTCGCCGTCTCTCAGCCGGCGCTGGACGCCCC
GGAGCTAGTGTGGACGGACTACATCCAGTTCGAGATCGACGCCGGCGAGCTCGACAGAGC
GAGGCAGCTCTACGAGAGGCTTCTCGGCAAAACACAACACCTCAACGTGTGGGTGAGCTA
CGCCGAGTTCGAGGCCACGGCGTGCTCCGGCGGCGCCGCCATCGCCGGGAACGCGGCGGA
GAAGGCCGAGCGGGTCCGGAGGTGCCGCGCCGTATGCCGAAGAGCGGACGAACACTTCAG
GGGATGCGCTGATGATCCCGCCATGAAGGAGGCAAGGGCGATGCTTCTCCAACAATGGCT
GGCGAAGGAGGCCGCGTTCGGCGACCTCGGAGAGGTGGAGCCGGTCGAGAAGAAGACGCC
GAGAAGGGTGAAGAGGAAGAGGAGTCTCCTCGCCGACGGCAATGGCGGAGGAGGAGGATG
CGAGGAGTTCTTCGATTACATTTTTGGTGATGAAGAGGATGCAACGGCAGCAGCTGGCTT
CAAACTGATGAAAGCTGCTTACGAATGGAAGAACAGTGGCCATGTTATTACTTATTAGAG
TGTAAATCTTTCTGTTCTAACAACCTTGTTGTATGTTATTGCCGTGGAATTAGTTTGTTA
AGC