Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0316400-02
CDS Infomation	cds chromosome:IRGSP-1.0:10:8299611:8308961:-1 gene:Os10g0316400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0316400-01);Hypothetical conserved gene. (Os10t0316400-02)
Sequence	ATGTCACAGTTTCGCCCTTCACAACATGGTAGTGATAGTGATGCCCAGATGTGGCAACGA CAGATGTTGTATAAGCAGCTACAAGAGTTCCAGAGGCAGCAACAGCAGCAGCAGCTTGAT CATGGAGGTAGAATGCAGAACTCTTTTGGGCAGTTCCAAGCCCCTGCAAAACAATCCCTA GCTGATCAGTTTCCAACCATGATGAATGAAATGCCTATGAATGAGCCATCAAGTTATGCA TGGTCAAATGGTATTTCTCTTGGTGGCTCCAGGTTAGGAAGCAACTCTCAGATTTTAAAT AATGGTAACCCACATTGGGAGCAACATCATGGTGCTTCTCTTGGCACAAGCAGCTTTGCA AATGGTGCAGTGTACTCAAACATCCAGAATCTCATGAGGCCAATGGGATCAGTTAATAAT AAAGTAAACCAATCTTCTCATTCCCTTCCTGCTAGCATGAGCAAAGGTTCTGGGAATCAG TACTCCCAGTTCCCAGGATTTCCTGCTAATTCCCACAATGCAATGGCAAGAGCTGGTTCA GACCAGTCAGATATGACAGCAAGGTTTGCAAGCTCAATTAATTCGTTCCAGAATGAACAT GGTCTTTGTGAACAAGTTACATCCAATAATTTGCAGAATTTTTGTGAAAATGGAAGTGTA TTAAGTGATTCTTCGACTCAAAGTCAAGGCGGTAACTTGAAGACAGGCAGTCCTGTTCTA GTTAATCACTTACAACATGGTTTTCATGTTCAACATTTTAATGGCTGGATGAACCAAGTT GAATGTCAGTCAGCGCCGCACGTCGGACCAGCTAGCAGTGCTGCTAGCCTTGATCCCACA GAGGAGAAAATTTTGTATGGAGATGATAACAATTTTACTGGTTTATTGGGAGAGGATGAT TCATCAGATGGAGTTCCTGGTCATGATAACTCTTCAGGCAATGGCAACTCAAGCATCCCT GTGTCAGCTCAAGGGGGTAGCTGGAGTGCTCTTATGCAGGAAGCATTACAGTCGACAAGC AGTAAAAATGGCCTCCAGGAAGAGTGGAGTAGCGTGAATTTCCAGAATAGAGACCAGGCA TTTACAAATAAAATGACTTCTCCTGATCTGGAACAGAGGCAGCATGCAACTTTAAATAGC ATGAACCTACATAGTGCACCTCCAAGTGCACAACCTTCTCCCTCACATGATGGTTCTTCA GGAACCATGAATAATCTGAAGTTCACCAGTTTTCAGCGTGCAACGAAATCCGTGTATGAC CATCAGGAAAAATTTTCTTATGGATCTACCTCCGCCGCTATCAATAATCACACAACTACA GGAGCTAATGATGGGCTTTTTCAACCGAGTTTAAAGCAAAGCCATTCTGGTGACTGTGGA TCACCAGAACATGTCAACTTATCAATTGGTGTTTGGGCACAACAGAAACCTATGCTGCTG AAACGAAATTTGAACTCAGGTGGTGAACGTTTTATGCCACAGAACGCACAAGGACTTGGG GTATTGCAACAAAGCAGTTATAACCATAATTTTAACGGGGAGTCTAGTAATAACCAAAGC AACTGGAATGGCCGAAATTCCAATTGCGTCAATACATATTCAATTAATAATTTTCAGCAG TCAAACCCTGATGTGAACACTGTTCGAGTGCCAAATGATGGTTATAGCAGTAAAAATACT GTCCTGACGAGTTCAAGCACAGGAATGTTTAGCCCAGGCCAACATCAAATGATGCTTGGT CAGAGCGGGGGAAATTTTGGAAGCAACAATGCTCCAGGGCAAAGGCCACTTCCAGAGACT TCATGTTCACAAGGAAATAATGCAGAGTATGGACTTGCTGGCTTCAGCCAGATGTATACT AATGCAATTTCTGCTGAAGGACATAATTCAAATAATGGTCAGCATTTAGGCATCTCTTTT TCTGCAAGAGGTAATTCCTTTAGTGGAATGGATGCCCATAATTTGGGCCAATCTGACCAG AAAACGATGGGTCCATCTGCACTGCTGAATCATCTTAGTGCAACATCTGGAATTAGTACT GGACATTTTCCAACGAATTCTTTGTGCAATAATAAGTTATTGTCAGAGTCAATTCAGCCA CCAAATAACCAAGAGAACCTGCTGGGTGGGAGCTGCCAACTTGCTGGTCATGTTGGGTCA ACAAATGAGAAAATTGCAATGGTAGAGGAACAACTTACTCAACATTCTACTGCCAGCAAA TACTCGAATGAACCTCCCTTCAGAGGATATGATGGAACGTTGTTGCAAAACCCAAATAAA ATAGTTCAAACAAGTCAACATATGCTTCAACAATTTCTTCAGAAGGTGGACAGCACAAAT TCTGTTGTTTCTAGCAATATGCCCATCAGATCTGATATTACTCCTAATCAACTTAACCAG CCCCCTTTACAAGGATTTGGATTAAAATTGGCACCACCAATGCAACAACAACTAACTTCA GGTAATTTATGGACCAGTCACACCTCTGTTGACATCAAGCCAGCTGATAATTCAGTACCA GGGGAAGACCAGCGACAGCTACCTTCCACTCCTGGTTCGACGACTTCATCTGGCTACCCG AGTCGATCCTCACCATTTTACTCATCAGATGCTGATAATACTGGACTGTCAAGTGGGTGC CTCCCCCAAACTAAAAGCTTAGGCCAGCAATACCCAGTTGCAGAGCCAAAGTCTGCTCCT GTAAATTCTCTTCCTCAGCAGTCTCTGCAAGGTACTGCAGCAACAATGCTCAAGAATGTG TGGACAAACATCTCAGCACAGCGCCTGGGGGGTATCCAACATAACAAGATAACTCCAAAT ATTCTCCAGTCAATGATGTTCCCAAGTACTATTGGTGATTCCACATTACGGGGTTGTCCG AAAGATGATTATCAAAGAATGAGGGTAGCAAATCTATCTGATGATGCCACAACTACTACC AACTCAGGAAGGCAAGAAATAAAGCGAGTTGTGGAAAATGATGGATCTGACATACCAAAT ATGGATCAAATGGGAGATATTTTATTAGGAAAGAAAAATGCCCTTCAGAGACCCTTGATG CAGCATGGCATCATAAACTCGTCACAAGGGGAAAATATGGCAGCAAACATTCCAAATATG GGTTCTTCCTTTAACAAAGTTTCCACCTATGGTGGCATCAGTCTGCATGGAAGCCTGGCA CCATCCAATTCCCAGCAGATAAATTATTCTCTACTGCATCAGATTCAGGCCATTAAGCCT GTTGATTCTGATCCAGAAAATACGTCTGGAAAGAGGCTTAAAACAACTGATATGAGTTGT AATGCTTCACAAGTTGAATGGCCCGGTGCCGAAAGAGCTCCACATGGAGAAAATAATCCA TTGAGATTATGTACAGATAAAACTGAGGTCCCAAGAATCTCAAACTTGTTGCCATCAGAT CAGATGTTAAGGTTTGCTCCCAGGAACAGTGAAGATGTAACCTCAACCATGCCATCGCAG GTTCAGTTGAGGGAGTTAACCTCCACCTCCAATGATATGGCCACTGCAAGAACTGATCTT CAAAATCAATGCTCATCTCTTGGCACAAGCTCAACAGAAAATTTAATTGAAAGTGGTGAC AAATTAATGATCAACCCTCAGATATCACCCTGGTTTCAACATGGTAGCAACAGAAATGGT CATAATCTTGCTATGTACAGTGTCAGGAAAACTGCATCACCGTATAATCATCCAAAAGTT CCCTGGAGCATGGACACTAGCAGTGTTTCTGGGCATGGACTTGAATGCTCTACTTCTGTC AGACCTGAAATGCCTTCTGGTCTAAAGGTATCTTCTTCGGTGCGAAGACCGAAGAAGCGG AAATTTAAAGCTCCTGTGCTTGTTTCTTGGAATCAAATCATTGATGGCCACCAAAAGTTG GCGGACATGAGCACTCTGGGTATGGACTGGCCTGAAGCAACTAATAGATTAATCGAGGTG GAAGATGAAGCTGACATTCAAGAAGATGCTCTCATATTATATTTACCACGTAAAAGGCTA ATTATGACCTCTCGGTTGATTCAGCAACTTCTCCCTTCTATACCAGCGGCTATTCTTAGG GCACAAGCTATATCAATGTACCAAAGTGTAACATATACTATTGCTAAGTTGACAGTTGGG GATGCATGCAGCATGCCTTCAAATTCATCTTTGGACACTGGCACTCTCATAAGTAGTGGG GATAAGTCATATGAACAAATTGAGAATGACAAAATGAGAGACAGATTCACAAAGGCCGTT GAATTTTTTATTCCAAGATTTAAAAAGATGGAGAATGATTTTGTGAGAAAATCTGGTTGG GAAAGAAGAGGTGTATGGTATTGA

Peptide Sequence

PEP ID	Os10t0316400-02
PEP Infomation	pep chromosome:IRGSP-1.0:10:8299611:8308961:-1 gene:Os10g0316400 transcript:Os10t0316400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0316400-01);Hypothetical conserved gene. (Os10t0316400-02)
Sequence	MSQFRPSQHGSDSDAQMWQRQMLYKQLQEFQRQQQQQQLDHGGRMQNSFGQFQAPAKQSL ADQFPTMMNEMPMNEPSSYAWSNGISLGGSRLGSNSQILNNGNPHWEQHHGASLGTSSFA NGAVYSNIQNLMRPMGSVNNKVNQSSHSLPASMSKGSGNQYSQFPGFPANSHNAMARAGS DQSDMTARFASSINSFQNEHGLCEQVTSNNLQNFCENGSVLSDSSTQSQGGNLKTGSPVL VNHLQHGFHVQHFNGWMNQVECQSAPHVGPASSAASLDPTEEKILYGDDNNFTGLLGEDD SSDGVPGHDNSSGNGNSSIPVSAQGGSWSALMQEALQSTSSKNGLQEEWSSVNFQNRDQA FTNKMTSPDLEQRQHATLNSMNLHSAPPSAQPSPSHDGSSGTMNNLKFTSFQRATKSVYD HQEKFSYGSTSAAINNHTTTGANDGLFQPSLKQSHSGDCGSPEHVNLSIGVWAQQKPMLL KRNLNSGGERFMPQNAQGLGVLQQSSYNHNFNGESSNNQSNWNGRNSNCVNTYSINNFQQ SNPDVNTVRVPNDGYSSKNTVLTSSSTGMFSPGQHQMMLGQSGGNFGSNNAPGQRPLPET SCSQGNNAEYGLAGFSQMYTNAISAEGHNSNNGQHLGISFSARGNSFSGMDAHNLGQSDQ KTMGPSALLNHLSATSGISTGHFPTNSLCNNKLLSESIQPPNNQENLLGGSCQLAGHVGS TNEKIAMVEEQLTQHSTASKYSNEPPFRGYDGTLLQNPNKIVQTSQHMLQQFLQKVDSTN SVVSSNMPIRSDITPNQLNQPPLQGFGLKLAPPMQQQLTSGNLWTSHTSVDIKPADNSVP GEDQRQLPSTPGSTTSSGYPSRSSPFYSSDADNTGLSSGCLPQTKSLGQQYPVAEPKSAP VNSLPQQSLQGTAATMLKNVWTNISAQRLGGIQHNKITPNILQSMMFPSTIGDSTLRGCP KDDYQRMRVANLSDDATTTTNSGRQEIKRVVENDGSDIPNMDQMGDILLGKKNALQRPLM QHGIINSSQGENMAANIPNMGSSFNKVSTYGGISLHGSLAPSNSQQINYSLLHQIQAIKP VDSDPENTSGKRLKTTDMSCNASQVEWPGAERAPHGENNPLRLCTDKTEVPRISNLLPSD QMLRFAPRNSEDVTSTMPSQVQLRELTSTSNDMATARTDLQNQCSSLGTSSTENLIESGD KLMINPQISPWFQHGSNRNGHNLAMYSVRKTASPYNHPKVPWSMDTSSVSGHGLECSTSV RPEMPSGLKVSSSVRRPKKRKFKAPVLVSWNQIIDGHQKLADMSTLGMDWPEATNRLIEV EDEADIQEDALILYLPRKRLIMTSRLIQQLLPSIPAAILRAQAISMYQSVTYTIAKLTVG DACSMPSNSSLDTGTLISSGDKSYEQIENDKMRDRFTKAVEFFIPRFKKMENDFVRKSGW ERRGVWY

Transcript Sequence

Transcript ID	Os10t0316400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:8299611:8308961:-1 gene:Os10g0316400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0316400-01);Hypothetical conserved gene. (Os10t0316400-02)
Sequence	GCGCTCCTTCGCCTGCGCCGATCTCCATCTCGCGTGCAGAGCAGGGGTGCCGTCGTCCTG CTGCATCCTGGGAAAGTCTTCCTCACCCTGGAAGCAAACTGTTTTAAAAGATTTATTGTG TCACATGATATGAATCTTAAGAATTTATTTATCTTGGGGCAGTCACATTTCTGCTGATAC TGGGTAGGGACTACCTACGACATGTCACAGTTTCGCCCTTCACAACATGGTAGTGATAGT GATGCCCAGATGTGGCAACGACAGATGTTGTATAAGCAGCTACAAGAGTTCCAGAGGCAG CAACAGCAGCAGCAGCTTGATCATGGAGGTAGAATGCAGAACTCTTTTGGGCAGTTCCAA GCCCCTGCAAAACAATCCCTAGCTGATCAGTTTCCAACCATGATGAATGAAATGCCTATG AATGAGCCATCAAGTTATGCATGGTCAAATGGTATTTCTCTTGGTGGCTCCAGGTTAGGA AGCAACTCTCAGATTTTAAATAATGGTAACCCACATTGGGAGCAACATCATGGTGCTTCT CTTGGCACAAGCAGCTTTGCAAATGGTGCAGTGTACTCAAACATCCAGAATCTCATGAGG CCAATGGGATCAGTTAATAATAAAGTAAACCAATCTTCTCATTCCCTTCCTGCTAGCATG AGCAAAGGTTCTGGGAATCAGTACTCCCAGTTCCCAGGATTTCCTGCTAATTCCCACAAT GCAATGGCAAGAGCTGGTTCAGACCAGTCAGATATGACAGCAAGGTTTGCAAGCTCAATT AATTCGTTCCAGAATGAACATGGTCTTTGTGAACAAGTTACATCCAATAATTTGCAGAAT TTTTGTGAAAATGGAAGTGTATTAAGTGATTCTTCGACTCAAAGTCAAGGCGGTAACTTG AAGACAGGCAGTCCTGTTCTAGTTAATCACTTACAACATGGTTTTCATGTTCAACATTTT AATGGCTGGATGAACCAAGTTGAATGTCAGTCAGCGCCGCACGTCGGACCAGCTAGCAGT GCTGCTAGCCTTGATCCCACAGAGGAGAAAATTTTGTATGGAGATGATAACAATTTTACT GGTTTATTGGGAGAGGATGATTCATCAGATGGAGTTCCTGGTCATGATAACTCTTCAGGC AATGGCAACTCAAGCATCCCTGTGTCAGCTCAAGGGGGTAGCTGGAGTGCTCTTATGCAG GAAGCATTACAGTCGACAAGCAGTAAAAATGGCCTCCAGGAAGAGTGGAGTAGCGTGAAT TTCCAGAATAGAGACCAGGCATTTACAAATAAAATGACTTCTCCTGATCTGGAACAGAGG CAGCATGCAACTTTAAATAGCATGAACCTACATAGTGCACCTCCAAGTGCACAACCTTCT CCCTCACATGATGGTTCTTCAGGAACCATGAATAATCTGAAGTTCACCAGTTTTCAGCGT GCAACGAAATCCGTGTATGACCATCAGGAAAAATTTTCTTATGGATCTACCTCCGCCGCT ATCAATAATCACACAACTACAGGAGCTAATGATGGGCTTTTTCAACCGAGTTTAAAGCAA AGCCATTCTGGTGACTGTGGATCACCAGAACATGTCAACTTATCAATTGGTGTTTGGGCA CAACAGAAACCTATGCTGCTGAAACGAAATTTGAACTCAGGTGGTGAACGTTTTATGCCA CAGAACGCACAAGGACTTGGGGTATTGCAACAAAGCAGTTATAACCATAATTTTAACGGG GAGTCTAGTAATAACCAAAGCAACTGGAATGGCCGAAATTCCAATTGCGTCAATACATAT TCAATTAATAATTTTCAGCAGTCAAACCCTGATGTGAACACTGTTCGAGTGCCAAATGAT GGTTATAGCAGTAAAAATACTGTCCTGACGAGTTCAAGCACAGGAATGTTTAGCCCAGGC CAACATCAAATGATGCTTGGTCAGAGCGGGGGAAATTTTGGAAGCAACAATGCTCCAGGG CAAAGGCCACTTCCAGAGACTTCATGTTCACAAGGAAATAATGCAGAGTATGGACTTGCT GGCTTCAGCCAGATGTATACTAATGCAATTTCTGCTGAAGGACATAATTCAAATAATGGT CAGCATTTAGGCATCTCTTTTTCTGCAAGAGGTAATTCCTTTAGTGGAATGGATGCCCAT AATTTGGGCCAATCTGACCAGAAAACGATGGGTCCATCTGCACTGCTGAATCATCTTAGT GCAACATCTGGAATTAGTACTGGACATTTTCCAACGAATTCTTTGTGCAATAATAAGTTA TTGTCAGAGTCAATTCAGCCACCAAATAACCAAGAGAACCTGCTGGGTGGGAGCTGCCAA CTTGCTGGTCATGTTGGGTCAACAAATGAGAAAATTGCAATGGTAGAGGAACAACTTACT CAACATTCTACTGCCAGCAAATACTCGAATGAACCTCCCTTCAGAGGATATGATGGAACG TTGTTGCAAAACCCAAATAAAATAGTTCAAACAAGTCAACATATGCTTCAACAATTTCTT CAGAAGGTGGACAGCACAAATTCTGTTGTTTCTAGCAATATGCCCATCAGATCTGATATT ACTCCTAATCAACTTAACCAGCCCCCTTTACAAGGATTTGGATTAAAATTGGCACCACCA ATGCAACAACAACTAACTTCAGGTAATTTATGGACCAGTCACACCTCTGTTGACATCAAG CCAGCTGATAATTCAGTACCAGGGGAAGACCAGCGACAGCTACCTTCCACTCCTGGTTCG ACGACTTCATCTGGCTACCCGAGTCGATCCTCACCATTTTACTCATCAGATGCTGATAAT ACTGGACTGTCAAGTGGGTGCCTCCCCCAAACTAAAAGCTTAGGCCAGCAATACCCAGTT GCAGAGCCAAAGTCTGCTCCTGTAAATTCTCTTCCTCAGCAGTCTCTGCAAGGTACTGCA GCAACAATGCTCAAGAATGTGTGGACAAACATCTCAGCACAGCGCCTGGGGGGTATCCAA CATAACAAGATAACTCCAAATATTCTCCAGTCAATGATGTTCCCAAGTACTATTGGTGAT TCCACATTACGGGGTTGTCCGAAAGATGATTATCAAAGAATGAGGGTAGCAAATCTATCT GATGATGCCACAACTACTACCAACTCAGGAAGGCAAGAAATAAAGCGAGTTGTGGAAAAT GATGGATCTGACATACCAAATATGGATCAAATGGGAGATATTTTATTAGGAAAGAAAAAT GCCCTTCAGAGACCCTTGATGCAGCATGGCATCATAAACTCGTCACAAGGGGAAAATATG GCAGCAAACATTCCAAATATGGGTTCTTCCTTTAACAAAGTTTCCACCTATGGTGGCATC AGTCTGCATGGAAGCCTGGCACCATCCAATTCCCAGCAGATAAATTATTCTCTACTGCAT CAGATTCAGGCCATTAAGCCTGTTGATTCTGATCCAGAAAATACGTCTGGAAAGAGGCTT AAAACAACTGATATGAGTTGTAATGCTTCACAAGTTGAATGGCCCGGTGCCGAAAGAGCT CCACATGGAGAAAATAATCCATTGAGATTATGTACAGATAAAACTGAGGTCCCAAGAATC TCAAACTTGTTGCCATCAGATCAGATGTTAAGGTTTGCTCCCAGGAACAGTGAAGATGTA ACCTCAACCATGCCATCGCAGGTTCAGTTGAGGGAGTTAACCTCCACCTCCAATGATATG GCCACTGCAAGAACTGATCTTCAAAATCAATGCTCATCTCTTGGCACAAGCTCAACAGAA AATTTAATTGAAAGTGGTGACAAATTAATGATCAACCCTCAGATATCACCCTGGTTTCAA CATGGTAGCAACAGAAATGGTCATAATCTTGCTATGTACAGTGTCAGGAAAACTGCATCA CCGTATAATCATCCAAAAGTTCCCTGGAGCATGGACACTAGCAGTGTTTCTGGGCATGGA CTTGAATGCTCTACTTCTGTCAGACCTGAAATGCCTTCTGGTCTAAAGGTATCTTCTTCG GTGCGAAGACCGAAGAAGCGGAAATTTAAAGCTCCTGTGCTTGTTTCTTGGAATCAAATC ATTGATGGCCACCAAAAGTTGGCGGACATGAGCACTCTGGGTATGGACTGGCCTGAAGCA ACTAATAGATTAATCGAGGTGGAAGATGAAGCTGACATTCAAGAAGATGCTCTCATATTA TATTTACCACGTAAAAGGCTAATTATGACCTCTCGGTTGATTCAGCAACTTCTCCCTTCT ATACCAGCGGCTATTCTTAGGGCACAAGCTATATCAATGTACCAAAGTGTAACATATACT ATTGCTAAGTTGACAGTTGGGGATGCATGCAGCATGCCTTCAAATTCATCTTTGGACACT GGCACTCTCATAAGTAGTGGGGATAAGTCATATGAACAAATTGAGAATGACAAAATGAGA GACAGATTCACAAAGGCCGTTGAATTTTTTATTCCAAGATTTAAAAAGATGGAGAATGAT TTTGTGAGAAAATCTGGTTGGGAAAGAAGAGGTGTATGGTATTGAAGAGAGTTGGACGGG GTAGATATGTACTAGTAGAATAGACATACAGAGTTTCCTCTTTGCTTGCCTTAGAAAGAG ACCTGCATCCCTCTTTTCTGAAGGACCCCCTGAAGTAATTAACTAGCTTGATTGTTTACT GAACGCACTTCTCACTAATTTGATTTTCAAGTTCACTGCAGAGGTGCTAGTGCCACCTTT TGTATTGCAACAATTGATTTTTAATTTTATATATTTCAGACATACTTTATTTATGTCTT