Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0204100-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:7414709:7419483:-1 gene:Os10g0204100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0204100-01)
Sequence

ATGGGGAACATGGGCAGCAGCGGCGGCCACCGTCGCCGGAACAACGGCCACGGCCGGCAT
CACCACCATGGTCAGCCCACCGCGCCGCCGCCGCCGCCGCAGCAGCAGCAACAGGAGGTG
GCGCCGAACCGCTACGTGTTCGCGGCGGCGAGCCCTTACCCGCCGCAGTACCCGAATCCC
AACCTGCCGCAGTACTACCCGCAGTACGGGAACTTCTACCCGCCGCCGCCGCCATCGATG
CCAGGGCCGCTCCCGGCGCCGTACGACCACCACCACCGTGGGGGTGGGCCAGCACAGCCG
CCGCCACCACCGCCGCCACCCCAGCCGATCCATGCCGCAGGGGAGTTCCCGCCTGCTATG
CTGCAACAGCATCCCCACTACCATGGCTGGGGTGGAAACTTCTCGTATGGTCCACCTACC
CAGCCGCCGGCGCCGGCGCCGCCGTATGTTGAGCACCAGAAGGCTGTCACCATCCGTAAC
GATGTGAATCTCAAGAAGGAGACTCTCCGGGTTGAGCCTGATGACGAGTGCCCTGGACGA
TTCCTCATCACCTTCACCTTTGATGCCACCGTCGCTGGAAGCATGACTGTTTACTTCTTT
GCAAAGGAGGAGCTGAACTGTAACCTTACAGCAACGAAAGAAGATTTACTCAAGCCAGTC
ACTGTAACATTTAAAGAGGGTCTTGGTCAAAAATTTAGGCAACCTTCAGGGACAGGAATT
GACTTCTCGTTGTTTGAAGATGCTGAATTATTTAAGGAGGGAGAGATGGATGTATATCCA
CTTGCAGTGAAGGCTGAAACAACATTCTCAATTGGTCAATTCTCAGAAGGGGAAGAACAA
AAGTCACAAACTCCAAATTCACAGATCACCCAGGCTGTATTTGAGAGGAAGGAGAATGGG
GATTACCATGTTCGTGTTGTTAAGCAGATCCTTTGGGTCAATGGCACGAGATATGAGTTG
CAGGAGATTTATGGAATTGGAAACTCTGTTGAAGGTGACACCGAAGGGAATGATCCTGGC
AAAGAGTGTGTTATCTGCCTATCGGAGCCAAGGGATACAACTGTCCTCCCATGTAGACAT
ATGTGTATGTGCAGCGAGTGCGCAAAGGTTCTGAGGTACCAGACCAACCGATGTCCCATC
TGCAGGCAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACAACAAAGGTGAAGAGCAA
CAGCAGCAGCAGATACCACAACCACCACCACCTCCTTCAACCGCGCCTCCGCACCAACAG
CAAGAGTCGCAAGCGTGA

Peptide Sequence

PEP ID

Os10t0204100-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:7414709:7419483:-1 gene:Os10g0204100 transcript:Os10t0204100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0204100-01)
Sequence

MGNMGSSGGHRRRNNGHGRHHHHGQPTAPPPPPQQQQQEVAPNRYVFAAASPYPPQYPNP
NLPQYYPQYGNFYPPPPPSMPGPLPAPYDHHHRGGGPAQPPPPPPPPQPIHAAGEFPPAM
LQQHPHYHGWGGNFSYGPPTQPPAPAPPYVEHQKAVTIRNDVNLKKETLRVEPDDECPGR
FLITFTFDATVAGSMTVYFFAKEELNCNLTATKEDLLKPVTVTFKEGLGQKFRQPSGTGI
DFSLFEDAELFKEGEMDVYPLAVKAETTFSIGQFSEGEEQKSQTPNSQITQAVFERKENG
DYHVRVVKQILWVNGTRYELQEIYGIGNSVEGDTEGNDPGKECVICLSEPRDTTVLPCRH
MCMCSECAKVLRYQTNRCPICRQPVERLLEIKVNNKGEEQQQQQIPQPPPPPSTAPPHQQ
QESQA

Transcript Sequence

Transcript ID

Os10t0204100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:7414709:7419483:-1 gene:Os10g0204100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0204100-01)
Sequence

GTCGATTTCGTTCCCTAGCCAAGCGCTCCAGGTCGTAAATTCCACCCAAATTCGTTGCCT
CCCCCACTACCCAACCCAAATCCGTAGAGGAACATAGCAGAAGTGAAGCCAAGAAACCAG
TAAAAAAGCAAAGCTTCCTTGCTTCGATCGATTTATGATCAATTTTTGAAGATACTTCCG
GCCACCGCTGGTCGATTCCGGCGACCCCGTTTCCAGGAGATGGGGAACATGGGCAGCAGC
GGCGGCCACCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACC
GCGCCGCCGCCGCCGCCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTC
GCGGCGGCGAGCCCTTACCCGCCGCAGTACCCGAATCCCAACCTGCCGCAGTACTACCCG
CAGTACGGGAACTTCTACCCGCCGCCGCCGCCATCGATGCCAGGGCCGCTCCCGGCGCCG
TACGACCACCACCACCGTGGGGGTGGGCCAGCACAGCCGCCGCCACCACCGCCGCCACCC
CAGCCGATCCATGCCGCAGGGGAGTTCCCGCCTGCTATGCTGCAACAGCATCCCCACTAC
CATGGCTGGGGTGGAAACTTCTCGTATGGTCCACCTACCCAGCCGCCGGCGCCGGCGCCG
CCGTATGTTGAGCACCAGAAGGCTGTCACCATCCGTAACGATGTGAATCTCAAGAAGGAG
ACTCTCCGGGTTGAGCCTGATGACGAGTGCCCTGGACGATTCCTCATCACCTTCACCTTT
GATGCCACCGTCGCTGGAAGCATGACTGTTTACTTCTTTGCAAAGGAGGAGCTGAACTGT
AACCTTACAGCAACGAAAGAAGATTTACTCAAGCCAGTCACTGTAACATTTAAAGAGGGT
CTTGGTCAAAAATTTAGGCAACCTTCAGGGACAGGAATTGACTTCTCGTTGTTTGAAGAT
GCTGAATTATTTAAGGAGGGAGAGATGGATGTATATCCACTTGCAGTGAAGGCTGAAACA
ACATTCTCAATTGGTCAATTCTCAGAAGGGGAAGAACAAAAGTCACAAACTCCAAATTCA
CAGATCACCCAGGCTGTATTTGAGAGGAAGGAGAATGGGGATTACCATGTTCGTGTTGTT
AAGCAGATCCTTTGGGTCAATGGCACGAGATATGAGTTGCAGGAGATTTATGGAATTGGA
AACTCTGTTGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGTGTGTTATCTGCCTA
TCGGAGCCAAGGGATACAACTGTCCTCCCATGTAGACATATGTGTATGTGCAGCGAGTGC
GCAAAGGTTCTGAGGTACCAGACCAACCGATGTCCCATCTGCAGGCAACCTGTGGAGCGT
TTGCTCGAGATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAGCAGCAGATACCACAA
CCACCACCACCTCCTTCAACCGCGCCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCG
CATTTGAACTTCATACATATTACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATA
TACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTTTTTAGTATA
TGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTG
TGCTGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAATTC
TCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAA
GTGGAGTGCGTGTGCGGTATTGGCTATAGTTCTGTCGTTAACTTGCCCTTTGAGGCAACA
GTATGCGTGTAATTATCTGGCAATTACTCCCATCAAACAAGAGCTAAATGGATATTATTT
CCCCGTC