Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0198600-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:6868486:6878295:1 gene:Os10g0198600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Intron-encoded nuclease 2 domain containing protein. (Os10t0198600-01)
Sequence	ATGGCGCCGCAGCTGCAGGGCTGCTACGCGGTCTCGTCCTGGCCCCGGCTCCCGCGGCTG CCCCCGTGGCCCTGCGCCTCCCACGCGCAGCGGCGGCGGGTGCTGCGCCTCCTGCCGCCG CGGCGCCGCTGCGCCGGTGCGGTCCGGGTGGTCGCGGAGGCTGGCCCGGCCCTGGCAATA GACCGCGTCGCGGAGGAGGCGGACGTGCGGTTTCCGGGGGATGTGGAGGGGGTTCCGGGC CAGCAGCAGCAGCGGGAGGAGGAGGAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGG ATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACC CCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCGATGCAGGATCCCAAGGTT AAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCC ATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGC TTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATA TCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAA AAAGTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCT CCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATAC CGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTA CCACGAAAGCCAAGATCTGCCAGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAA CCTATTCAATCCAGATCAGCTGGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAG AGAAAGAAAAGTGCAACTCCTTACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATA ACAAAGATTCGAGCTCAAAGGGCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGG GCTAGGTCACTGATTGCAGAAGCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCC ACAAGCCCTTTTGCTCAAGCATCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGA TTATCACTTCAACACGTTGATGATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCA CAAGACTCAGGTGCGTCTGATTTGCACAATCACGACATGGCAAATCAAAATGACGTGATC AAGCAAGAGAATAAACCAGTCAATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGA GATTTCTATTTTGACGTGTCGACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGA ATAGAAAATTCTATGGAAAGAGCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGAC GTGAACGAAAATCACAGGATGAAAGATTTTAACGCACATCAATTAATGGTTAATGATGAA TCAATAACAATTGACCAAATTGCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAG GAGGATGACACGCTACCTGTGCAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTT GAAGTGGAAGAATAA

Peptide Sequence

PEP ID	Os10t0198600-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:6868486:6878295:1 gene:Os10g0198600 transcript:Os10t0198600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Intron-encoded nuclease 2 domain containing protein. (Os10t0198600-01)
Sequence	MAPQLQGCYAVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCAGAVRVVAEAGPALAI DRVAEEADVRFPGDVEGVPGQQQQREEEEDAVDERERLRRMRISKANKGNTPWNKGRKHT PETLQRIRERTRIAMQDPKVKKKLMHLGHAQSEETRIKISMGVRRGWNLRLQKLMIQDGC FVEWRDMIADAARKGFAGGISLQWNSYKILTEQMRQEWLEKVQKRRSMPRPTGNRRAPKS PEQRRKIAEAIAAKWLDKEYRERVCSGIASYHGTSSGTKVPRKPRSAREPGSKRDTVKKK PIQSRSAGLEDACGTTPTVKRKKSATPYKDPMAGEKLEMITKIRAQRAALEIEKKEAIKR ARSLIAEAEKAANALETVASTSPFAQASLIEARKLVTEARLSLQHVDDEGPADSASDDAS QDSGASDLHNHDMANQNDVIKQENKPVNGMELPPSNVNGRDFYFDVSTLTETDHLRDYQR IENSMERAYLLPSASSAIQDVNENHRMKDFNAHQLMVNDESITIDQIASEVAEIYPDEPQ EDDTLPVQKSKMRWVRGRLVEVEE

Transcript Sequence

Transcript ID	Os10t0198600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:6868486:6878295:1 gene:Os10g0198600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Intron-encoded nuclease 2 domain containing protein. (Os10t0198600-01)
Sequence	ACACGCACAGAGCCACGCTACTCTCCCCACCCAGATTCCACCATTTCACGCCCCCGCCTC CACTTCGCCTTCGCCTCGCCGCGCCGCCGCCGTCTAGCCCTTCCGCGTAGGCCCAGGCGG CCGGGCCGGCGGGAAGCGGCGGCGAGCTCCTCCCCTCTGATGGCGCCGCAGCTGCAGGGC TGCTACGCGGTCTCGTCCTGGCCCCGGCTCCCGCGGCTGCCCCCGTGGCCCTGCGCCTCC CACGCGCAGCGGCGGCGGGTGCTGCGCCTCCTGCCGCCGCGGCGCCGCTGCGCCGGTGCG GTCCGGGTGGTCGCGGAGGCTGGCCCGGCCCTGGCAATAGACCGCGTCGCGGAGGAGGCG GACGTGCGGTTTCCGGGGGATGTGGAGGGGGTTCCGGGCCAGCAGCAGCAGCGGGAGGAG GAGGAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAAC AAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATT CGGGAGAGAACCAGGATTGCGATGCAGGATCCCAAGGTTAAGAAAAAGTTGATGCATCTG GGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGG AACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGCTTTGTGGAGTGGAGAGACATG ATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATAT AAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAAGTCCAGAAAAGAAGATCA ATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATT GCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGA ATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAAGCCAAGATCTGCC AGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAACCTATTCAATCCAGATCAGCT GGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAGAGAAAGAAAAGTGCAACTCCT TACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATAACAAAGATTCGAGCTCAAAGG GCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGGGCTAGGTCACTGATTGCAGAA GCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCCACAAGCCCTTTTGCTCAAGCA TCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGATTATCACTTCAACACGTTGAT GATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCACAAGACTCAGGTGCGTCTGAT TTGCACAATCACGACATGGCAAATCAAAATGACGTGATCAAGCAAGAGAATAAACCAGTC AATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGAGATTTCTATTTTGACGTGTCG ACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGAATAGAAAATTCTATGGAAAGA GCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGACGTGAACGAAAATCACAGGATG AAAGATTTTAACGCACATCAATTAATGGTTAATGATGAATCAATAACAATTGACCAAATT GCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAGGAGGATGACACGCTACCTGTG CAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTTGAAGTGGAAGAATAAACAGTT ACCAGAATTATATTGGTTGACTAAACTGTTCAAGATATCATTATCTTGCATTCCGCTTCT GCTTTGATTACTGTTGGTATGGACCAAAATGGGAAATGATTGCTGATCTTGGCACGTATT CATGGTGCATTCAACCATGGGAATTAGTCGGGAATACGCCATGACAGAGCCTATTATATT CTGAGGTGAGATGCTTGTAATTAGTAGTTGCCAACTTTAGATATTTTCCTCTTCTTGAAT GTAGTCAGGTTAGCCAAACTGAAATCCTAAAATCACGGTGTGGTGGATGCATTTATCTTG TATTAGAACATTTTGTAGCTGTCAGATTGAGGTCCTACGGATAGCCCTAACACAGATTTC ATTAAGTCAAATCATACGAGGTTGTCTTGTAAGATAAGTCAAATCATACGAGGTCGTCTT GTAAGATATTCTGTAGCTATCATTTTTTTTCTAGGTTATCTTGTACCTGAGTTCATTTGT GAACTTGTATCGAGAGAACTACTGTTTCTGGCTTTCTGCTTTGTGCC