Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0193500-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:6497068:6510300:1 gene:Os10g0193500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA239 description:Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein. (Os10t0193500-01)
Sequence

ATGGAACACATCGGCCCTTTCCTCCTGGCAGCAATGGCAGTGGCGGCGGCCGTCGCCGCG
GCATCGGAGACGGCTACAACTGTGCCGGTGGCGGCGCTACCGCCGCTGCCAGCGCTGCCG
GTCACAGCGGCGGCGAGCACGCTGCAGCCGGGGACGGCGTCGTGCATGGACGACCTCATG
CCATGCGCGACCGTCTCCGACGACCCCACCATGCTAACGCCATGCTGCGAGGCGGTGGCG
GAGGTGTTGAAGAGCGATCCGGAGTGCCTCTGCAAGGTCGCCGAGATGTCCAGAAACAAC
ACCAGGAAGCTCGCGAGCGTCAGCAACAACCTCGACAGCGATCAGCAATTGTTCGCCCAG
TGCAAGATCACCGGCGTTTCGTCCGACGTCTGCCACAAGGACAAGGGGCATCAAGGAGGT
CATAATGAAACAGACACGCCGGCCGGCGACTCTTTGACAGACTCCCAAGCAAAAAATGCC
TCTCCTCCCTCGAGGCTGAGTGAGGCATTCCGGATCTTGTTCCTGCTTCAGATACTGTTC
ATTTTCGGACTGTGA

Peptide Sequence

PEP ID

Os10t0193500-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:6497068:6510300:1 gene:Os10g0193500 transcript:Os10t0193500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA239 description:Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein. (Os10t0193500-01)
Sequence

MEHIGPFLLAAMAVAAAVAAASETATTVPVAALPPLPALPVTAAASTLQPGTASCMDDLM
PCATVSDDPTMLTPCCEAVAEVLKSDPECLCKVAEMSRNNTRKLASVSNNLDSDQQLFAQ
CKITGVSSDVCHKDKGHQGGHNETDTPAGDSLTDSQAKNASPPSRLSEAFRILFLLQILF
IFGL

Transcript Sequence

Transcript ID

Os10t0193500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:6497068:6510300:1 gene:Os10g0193500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA239 description:Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein. (Os10t0193500-01)
Sequence

GCGTCAATCACTCTCGTCCACACCTCAGACAAACAGCAATCATGGAACACATCGGCCCTT
TCCTCCTGGCAGCAATGGCAGTGGCGGCGGCCGTCGCCGCGGCATCGGAGACGGCTACAA
CTGTGCCGGTGGCGGCGCTACCGCCGCTGCCAGCGCTGCCGGTCACAGCGGCGGCGAGCA
CGCTGCAGCCGGGGACGGCGTCGTGCATGGACGACCTCATGCCATGCGCGACCGTCTCCG
ACGACCCCACCATGCTAACGCCATGCTGCGAGGCGGTGGCGGAGGTGTTGAAGAGCGATC
CGGAGTGCCTCTGCAAGGTCGCCGAGATGTCCAGAAACAACACCAGGAAGCTCGCGAGCG
TCAGCAACAACCTCGACAGCGATCAGCAATTGTTCGCCCAGTGCAAGATCACCGGCGTTT
CGTCCGACGTCTGCCACAAGGACAAGGGGCATCAAGGAGGTCATAATGAAACAGACACGC
CGGCCGGCGACTCTTTGACAGACTCCCAAGCAAAAAATGCCTCTCCTCCCTCGAGGCTGA
GTGAGGCATTCCGGATCTTGTTCCTGCTTCAGATACTGTTCATTTTCGGACTGTGAAGCA
CCATTCATTGGAGACAGTATTTTCATTTTCCGTATTCATCTTCCTGTTCAATGTTACCAT
ATGGATGCCAAGTATTTGACAGTGGTGAATGATTCGAGCTTAATGGCCTTC