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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0191900-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:6404506:6405513:1 gene:Os10g0191900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Histone-fold domain containing protein. (Os10t0191900-00)
Sequence

ATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGG
TTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAA
CAGATCGAAGAATCCGCAGGCAACGAAGAGCTTATACTGCCGATTTCCCGTGTCAAGAAT
ATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACA
AAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTTCGTGCTTGGGTGTGCGCCAACTCA
CACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCC
TATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAG
ATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCT
CCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCAATATTCCTGTTTGTCCT
CCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGA
GAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACC
AACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGT
AGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCAT
GCATGTCCTTCCCTAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGT
TTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATT
TCACAAGATGCTATTGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAG
CATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGA

Peptide Sequence

PEP ID

Os10t0191900-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:6404506:6405513:1 gene:Os10g0191900 transcript:Os10t0191900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Histone-fold domain containing protein. (Os10t0191900-00)
Sequence

MPIPEKDGVEDNQEDDTFSRLQLLAQQRHAMEKFWRMSQEQIEESAGNEELILPISRVKN
IIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTES
YHFLANVVHGHQALGSNIPEIGVSAWKRHKLDEMTSLCHPPQAVQVTDLANHPPNIPVCP
PIGQSGTQHTTSTHVLMMQGESIHKASKEKSPLKEVMVPTNKVGMTNSSYGVPNGGGATS
SKVVIDSPKGETAQVFSSQHACPSLEDNYVIPIPAGHGDSFRTLDEANIPQLHQEQKNFI
SQDAIVGENIPLNESLEKSKHKDEDLLFPDKDLPE

Transcript Sequence

Transcript ID

Os10t0191900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:6404506:6405513:1 gene:Os10g0191900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX description:Histone-fold domain containing protein. (Os10t0191900-00)
Sequence

ATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGG
TTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAA
CAGATCGAAGAATCCGCAGGCAACGAAGAGCTTATACTGCCGATTTCCCGTGTCAAGAAT
ATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACA
AAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTTCGTGCTTGGGTGTGCGCCAACTCA
CACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCC
TATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAG
ATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCT
CCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCAATATTCCTGTTTGTCCT
CCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGA
GAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACC
AACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGT
AGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCAT
GCATGTCCTTCCCTAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGT
TTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATT
TCACAAGATGCTATTGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAG
CATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGA