Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os10t0189100-01
CDS Infomation	cds chromosome:IRGSP-1.0:10:6167200:6174593:-1 gene:Os10g0189100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phosphoglucomutase, plastidic phosphoglucomutase description:Plastidic phosphoglucomutase, Starch synthesis in rice pollen (Os10t0189100-01)
Sequence	ATGGCCTCGCACGCGCTCCGCCTCCACCCGCTGCTCTTCTCCGCCGCCGCCGCGCGCCCG GCTCCGCTCGCGGCGCGGCCCGGTGGTGGTGCCCGCCGGGTCCACCGCCGCCACTCTCTC GCCGTCGTCCGGTGCTCCTCCTCCGCCGCCCAGGCGCTCAAGATCAAGTCGATTCCGACC AAGCCCGTTGAGGGGCAGAAGACCGGGACCAGTGGGTTGAGGAAGAAGGTGAAAGTGTTC CAGCAGGAGAATTACCTCGCTAATTGGATTCAGGCTCTGTTCAATTCATTGCCCCCGGAG GATTATGTTGGTGGAACCCTTGTGCTTGGTGGTGATGGCCGATACTTTAACAAGGATGCT GCTCAGATTATCACTAAAATTGCAGCTGGGAATGGTGTTGGGAAGATCCTAGTTGGCAGG AACGGTCTGCTGTCAACGCCTGCTGTATCTGCAGTAATTCGTAAAAGACAAGCCAATGGT GGCTTCATCATGAGTGCAAGCCATAATCCAGGTGGGCCAGATAATGATTGGGGTATCAAG TTCAACTATAGCAGTGGGCAGCCAGCACCAGAGACAATTACCGACCAAATATATGGAAAC ACACTTTCGATTTCTGAAATAAAAACGGCAGATATTCCTGATGTTGATTTGTCCTCTCTA GGAGTTGTAAGCTATGGTGATTTCACCGTTGAAGTGATAGACCCTGTCTTGGACTACCTT GAGCTAATGGAGAATGTGTTTGACTTCCAACTTATCAAGGGCTTGTTGTCTCGGCCAGAT TTCAGGTTTGTATTTGATGCCATGCATGCTGTGACTGGTGCATATGCGGATCCTATTTTT GTTGAGAAACTTGGAGCTGATCCGGACTATATATTAAATGGTGTTCCACTTGAAGATTTT GGCAATGGTCACCCTGATCCTAATTTAACTTATGCCAAAGAGCTTGTGTTTACCATGTTT GGAAGCGGAGCACCTGACTTTGGTGCAGCAAGTGATGGTGATGGTGATCGAAACATGATT CTTGGAAGAAGGTTCTTTGTTACACCATCAGACTCTGTTGCAATAATTGCAGCGAATGCA CAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAGGTCTTGCTAGATCAATGCCAACG AGTGGTGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAGGTACCAACA GGATGGAAATTTTTTGGAAACCTAATGGATGCAGGTAAATTGTCTATATGTGGAGAGGAA AGTTTTGGGACAGGATCTGATCACATCAGGGAGAAGGATGGCATATGGGCTGTTCTAGCT TGGCTGTCCATACTTGCACACCGGAACAAGGATAAGAAGGCCGGGGAGAGATTAGTGTCA GTGGAAGATGTAGCTAGGGAACACTGGGCAACCTATGGAAGGAATTTCTTCTCCAGATAT GATTATGAGGAGTGTGAATCTGAGAGTGCAAATAAGATGATGGAGCATCTTAGAGATGTG ATCGCAAAAAGCAAGCCTGGAGAGAAATATGGAAACTATACCCTTCAGTTTGCCGATGAT TTCAGTTACACTGATCCGGTGGATGGTAGCACTGTATCTAAACAAGGGCTTCGATTTGTA TTCACCGATGGATCTAGGATTATCTTCCGCCTTTCGGGAACCGGATCTGCTGGAGCAACA ATCCGTATATACATTGAGCAATTCGAGTCTGATGCCTCAAAGCATGATCTGGATGCACAA ATAGCTTTGAAGCCTTTAATAGACCTAGCTCTATCTGTTTCAAAGTTGAAGGACTTCACT GGAAGAGATAAGCCTACTGTCATAACATAA

Peptide Sequence

PEP ID	Os10t0189100-01
PEP Infomation	pep chromosome:IRGSP-1.0:10:6167200:6174593:-1 gene:Os10g0189100 transcript:Os10t0189100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phosphoglucomutase, plastidic phosphoglucomutase description:Plastidic phosphoglucomutase, Starch synthesis in rice pollen (Os10t0189100-01)
Sequence	MASHALRLHPLLFSAAAARPAPLAARPGGGARRVHRRHSLAVVRCSSSAAQALKIKSIPT KPVEGQKTGTSGLRKKVKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKDA AQIITKIAAGNGVGKILVGRNGLLSTPAVSAVIRKRQANGGFIMSASHNPGGPDNDWGIK FNYSSGQPAPETITDQIYGNTLSISEIKTADIPDVDLSSLGVVSYGDFTVEVIDPVLDYL ELMENVFDFQLIKGLLSRPDFRFVFDAMHAVTGAYADPIFVEKLGADPDYILNGVPLEDF GNGHPDPNLTYAKELVFTMFGSGAPDFGAASDGDGDRNMILGRRFFVTPSDSVAIIAANA QAAIPYFQSGPKGLARSMPTSGALDRVADKLNVPFFEVPTGWKFFGNLMDAGKLSICGEE SFGTGSDHIREKDGIWAVLAWLSILAHRNKDKKAGERLVSVEDVAREHWATYGRNFFSRY DYEECESESANKMMEHLRDVIAKSKPGEKYGNYTLQFADDFSYTDPVDGSTVSKQGLRFV FTDGSRIIFRLSGTGSAGATIRIYIEQFESDASKHDLDAQIALKPLIDLALSVSKLKDFT GRDKPTVIT

Transcript Sequence

Transcript ID	Os10t0189100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:10:6167200:6174593:-1 gene:Os10g0189100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Phosphoglucomutase, plastidic phosphoglucomutase description:Plastidic phosphoglucomutase, Starch synthesis in rice pollen (Os10t0189100-01)
Sequence	GCGGTGCAAGCGCAACACCACCTCACCTCACTCCCCTTCTCGCCTCTTCTCCCCTTCTCC ACCTCCTCTTCTCTCCGCGTGGCGGTGGCATTGCCGGCCGCCGCATCGTCTCGGGATGGC CTCGCACGCGCTCCGCCTCCACCCGCTGCTCTTCTCCGCCGCCGCCGCGCGCCCGGCTCC GCTCGCGGCGCGGCCCGGTGGTGGTGCCCGCCGGGTCCACCGCCGCCACTCTCTCGCCGT CGTCCGGTGCTCCTCCTCCGCCGCCCAGGCGCTCAAGATCAAGTCGATTCCGACCAAGCC CGTTGAGGGGCAGAAGACCGGGACCAGTGGGTTGAGGAAGAAGGTGAAAGTGTTCCAGCA GGAGAATTACCTCGCTAATTGGATTCAGGCTCTGTTCAATTCATTGCCCCCGGAGGATTA TGTTGGTGGAACCCTTGTGCTTGGTGGTGATGGCCGATACTTTAACAAGGATGCTGCTCA GATTATCACTAAAATTGCAGCTGGGAATGGTGTTGGGAAGATCCTAGTTGGCAGGAACGG TCTGCTGTCAACGCCTGCTGTATCTGCAGTAATTCGTAAAAGACAAGCCAATGGTGGCTT CATCATGAGTGCAAGCCATAATCCAGGTGGGCCAGATAATGATTGGGGTATCAAGTTCAA CTATAGCAGTGGGCAGCCAGCACCAGAGACAATTACCGACCAAATATATGGAAACACACT TTCGATTTCTGAAATAAAAACGGCAGATATTCCTGATGTTGATTTGTCCTCTCTAGGAGT TGTAAGCTATGGTGATTTCACCGTTGAAGTGATAGACCCTGTCTTGGACTACCTTGAGCT AATGGAGAATGTGTTTGACTTCCAACTTATCAAGGGCTTGTTGTCTCGGCCAGATTTCAG GTTTGTATTTGATGCCATGCATGCTGTGACTGGTGCATATGCGGATCCTATTTTTGTTGA GAAACTTGGAGCTGATCCGGACTATATATTAAATGGTGTTCCACTTGAAGATTTTGGCAA TGGTCACCCTGATCCTAATTTAACTTATGCCAAAGAGCTTGTGTTTACCATGTTTGGAAG CGGAGCACCTGACTTTGGTGCAGCAAGTGATGGTGATGGTGATCGAAACATGATTCTTGG AAGAAGGTTCTTTGTTACACCATCAGACTCTGTTGCAATAATTGCAGCGAATGCACAGGC AGCAATTCCTTATTTCCAATCTGGTCCAAAAGGTCTTGCTAGATCAATGCCAACGAGTGG TGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAGGTACCAACAGGATG GAAATTTTTTGGAAACCTAATGGATGCAGGTAAATTGTCTATATGTGGAGAGGAAAGTTT TGGGACAGGATCTGATCACATCAGGGAGAAGGATGGCATATGGGCTGTTCTAGCTTGGCT GTCCATACTTGCACACCGGAACAAGGATAAGAAGGCCGGGGAGAGATTAGTGTCAGTGGA AGATGTAGCTAGGGAACACTGGGCAACCTATGGAAGGAATTTCTTCTCCAGATATGATTA TGAGGAGTGTGAATCTGAGAGTGCAAATAAGATGATGGAGCATCTTAGAGATGTGATCGC AAAAAGCAAGCCTGGAGAGAAATATGGAAACTATACCCTTCAGTTTGCCGATGATTTCAG TTACACTGATCCGGTGGATGGTAGCACTGTATCTAAACAAGGGCTTCGATTTGTATTCAC CGATGGATCTAGGATTATCTTCCGCCTTTCGGGAACCGGATCTGCTGGAGCAACAATCCG TATATACATTGAGCAATTCGAGTCTGATGCCTCAAAGCATGATCTGGATGCACAAATAGC TTTGAAGCCTTTAATAGACCTAGCTCTATCTGTTTCAAAGTTGAAGGACTTCACTGGAAG AGATAAGCCTACTGTCATAACATAAACATACCGGTGACATTAGCAATGTTACCACCTGTG TATTCTTTTATTTCTTTGTTTTTATAGCCCCTTCCAACCGATGAACCAATAATGTAATCT TAGGCCAAGTTTTGTACTGAGTTGATGGCAAACTGTATCTTGGAGGTACCTTTCATTGAA CATAGTATGCAGGAATGAATAAGCTTTTAG