Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0185400-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:5866542:5867333:-1 gene:Os10g0185400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os10t0185400-00)
Sequence

AAAGTTGTCAAAATCCGGCGCGGAGCAAGCAAGCAAACTCCACTCATGGCGCCGCTTCCG
CCTCGCGCCATTTCCCTCGTCTTCCTCTTCCTCTTCTTCACGGCCGCGTCGGCGACGAGG
CGACTCGACGACGCCGGTGGCCAGCCTACGGCGGCGTCGTCCGCGACGGCGTTCCTCCGG
TCCCGCTGCGCCACCACGCGGTACCCTGACGTCTGCTACGACTCCCTCCTCCCCTACGCC
TCCACGTTCCAGACCAGCCACGTCAAGCTCGCCGTCGCCGCGGCCAACGTCGCGGCGGCG
AAGCTCCGGGCGTTCTCGGCCCGCATCAATGATCTGCTCGCCCAAGGCGGCGCCGCTCGC
GTGGACGCCGCGCTGAAGGACTGCAAGAGCACCATCTCCGACGCCGGCGACCTGGCAAGG
CAGTCGTCGGCGGAGCTCGGACAGCTCGACGCGGGCGCCGCCGCGGCCGGCGTGAGCAGC
AGGCAGGCGAGGTGGCATGTCTCGAATGTGCAGACGTGGCTCAGCGCGGCCATCACCGAC
GAGGGGACGTGCACCGATGGGTTCGAGGAAGCCGGAGAAGCCGCGGCGGGGTCGCCCGCC
GGGAAGGAGGTCGCCGCCGGGGTGGCGAGAGTGAAGCAGCACACCAGCATCGCCCTCGCG
CTCGTCAACGGCATCCCGTTGTGA

Peptide Sequence

PEP ID

Os10t0185400-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:5866542:5867333:-1 gene:Os10g0185400 transcript:Os10t0185400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os10t0185400-00)
Sequence

KVVKIRRGASKQTPLMAPLPPRAISLVFLFLFFTAASATRRLDDAGGQPTAASSATAFLR
SRCATTRYPDVCYDSLLPYASTFQTSHVKLAVAAANVAAAKLRAFSARINDLLAQGGAAR
VDAALKDCKSTISDAGDLARQSSAELGQLDAGAAAAGVSSRQARWHVSNVQTWLSAAITD
EGTCTDGFEEAGEAAAGSPAGKEVAAGVARVKQHTSIALALVNGIPL

Transcript Sequence

Transcript ID

Os10t0185400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:5866542:5867333:-1 gene:Os10g0185400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os10t0185400-00)
Sequence

AAAGTTGTCAAAATCCGGCGCGGAGCAAGCAAGCAAACTCCACTCATGGCGCCGCTTCCG
CCTCGCGCCATTTCCCTCGTCTTCCTCTTCCTCTTCTTCACGGCCGCGTCGGCGACGAGG
CGACTCGACGACGCCGGTGGCCAGCCTACGGCGGCGTCGTCCGCGACGGCGTTCCTCCGG
TCCCGCTGCGCCACCACGCGGTACCCTGACGTCTGCTACGACTCCCTCCTCCCCTACGCC
TCCACGTTCCAGACCAGCCACGTCAAGCTCGCCGTCGCCGCGGCCAACGTCGCGGCGGCG
AAGCTCCGGGCGTTCTCGGCCCGCATCAATGATCTGCTCGCCCAAGGCGGCGCCGCTCGC
GTGGACGCCGCGCTGAAGGACTGCAAGAGCACCATCTCCGACGCCGGCGACCTGGCAAGG
CAGTCGTCGGCGGAGCTCGGACAGCTCGACGCGGGCGCCGCCGCGGCCGGCGTGAGCAGC
AGGCAGGCGAGGTGGCATGTCTCGAATGTGCAGACGTGGCTCAGCGCGGCCATCACCGAC
GAGGGGACGTGCACCGATGGGTTCGAGGAAGCCGGAGAAGCCGCGGCGGGGTCGCCCGCC
GGGAAGGAGGTCGCCGCCGGGGTGGCGAGAGTGAAGCAGCACACCAGCATCGCCCTCGCG
CTCGTCAACGGCATCCCGTTGTGAACCTGCAGACAAGCACTAGTGTTTTATTAAACTAAG
TTGTTGCAAAACTTATATCACTTCAATGATGCATGTAAAAGCACATATAATTGTATAAAG
GAATCATTATGG