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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0177400-02
CDS Infomation

cds chromosome:IRGSP-1.0:10:5341017:5346863:-1 gene:Os10g0177400 gene_biotype:protein_coding transcript_biotype:protein_coding description:TB2/DP1 and HVA22 related protein family protein. (Os10t0177400-01);Similar to TB2/DP1, HVA22 family protein, expressed. (Os10t0177400-02)
Sequence

ATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCT
TATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGG
TGTCAATATTGGATATTAGTCGCGCTACTGACGGTTTTGGAACGATTTGGTGATTTTGCA
ATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGC
CCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAG
TATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTT
GTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAG
TATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAACACAGCAGCAATCG
TATCCACAAAAACAGCAGCAAGCACAACCCCAACAACCGAAGCAATCACTGCCCCAACAG
CAACAGAAGCAATCACTGCCCCAACAGCAACAGCAGCAGATGCCCCATGAAAAACCAACA
ACGCTTCGCAGAGCAGCATCTGCTGCCGCTCGAACAGCTGGAATTATGCAGCAGTCGGAG
GACACGAAGATTGCTTACTCTAACCCCAAGACCAGGCGTCTACTACCCACAAAGTCTGCT
CCGACGGCTTCCACAAGGTCCACGGTTGCAGCAACGAAACCGGTCGAGGATCTTAAGAGC
AGTGGAATGAAGCTTGCAACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCA
GGCTCTGAGCCTAGTGCGCCGCCACTCCCGAAATCTGCAGAAGATGACATGTCTATCGAT
GAGGTTGACATTCCTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCA
ATGGAGGAGGCGATTCGAGTGACCCGTGGGAGGCTAAGGAAACGTATTGCCGCAGTTTCC
ACTGCTGATGGCGGTGCAGCAAATTAA

Peptide Sequence

PEP ID

Os10t0177400-02
PEP Infomation

pep chromosome:IRGSP-1.0:10:5341017:5346863:-1 gene:Os10g0177400 transcript:Os10t0177400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:TB2/DP1 and HVA22 related protein family protein. (Os10t0177400-01);Similar to TB2/DP1, HVA22 family protein, expressed. (Os10t0177400-02)
Sequence

MMGDFLSRVLLLAFGYAYPAYECYKTVELNKPEIEKLIFWCQYWILVALLTVLERFGDFA
ISWLPLYSEAKLMFFIYLWCPRTKGTSYVYETFFRPYISQYENDIDCSILDLRVRAGDML
VVYWQKVAIIGQTTFFNILKYASAQSPAHSSRSRSTQQQSYPQKQQQAQPQQPKQSLPQQ
QQKQSLPQQQQQQMPHEKPTTLRRAASAAARTAGIMQQSEDTKIAYSNPKTRRLLPTKSA
PTASTRSTVAATKPVEDLKSSGMKLATEEAPSPSSNAAMPGSEPSAPPLPKSAEDDMSID
EVDIPIEDMDEPVATPEETPMEEAIRVTRGRLRKRIAAVSTADGGAAN

Transcript Sequence

Transcript ID

Os10t0177400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:5341017:5346863:-1 gene:Os10g0177400 gene_biotype:protein_coding transcript_biotype:protein_coding description:TB2/DP1 and HVA22 related protein family protein. (Os10t0177400-01);Similar to TB2/DP1, HVA22 family protein, expressed. (Os10t0177400-02)
Sequence

AGACGGGAGTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCA
GTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCC
ATCCACGCTTCCATCTAAAGATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCT
ACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAA
CAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTACT
GACGGTTTTGGAACGATTTGGTGATTTTGCAATATCATGGCTACCACTGTACTCAGAAGC
AAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTA
TGAGACTTTCTTTAGGCCATACATTTCACAGTATGAGAATGATATCGACTGCAGTATTCT
TGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTAT
TGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTC
ATCAAGGTCGCGCTCAACACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACAACC
CCAACAACCGAAGCAATCACTGCCCCAACAGCAACAGAAGCAATCACTGCCCCAACAGCA
ACAGCAGCAGATGCCCCATGAAAAACCAACAACGCTTCGCAGAGCAGCATCTGCTGCCGC
TCGAACAGCTGGAATTATGCAGCAGTCGGAGGACACGAAGATTGCTTACTCTAACCCCAA
GACCAGGCGTCTACTACCCACAAAGTCTGCTCCGACGGCTTCCACAAGGTCCACGGTTGC
AGCAACGAAACCGGTCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCAACTGAGGAAGC
ACCATCTCCATCCAGTAATGCTGCCATGCCAGGCTCTGAGCCTAGTGCGCCGCCACTCCC
GAAATCTGCAGAAGATGACATGTCTATCGATGAGGTTGACATTCCTATAGAGGACATGGA
TGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGAGGAGGCGATTCGAGTGACCCGTGG
GAGGCTAAGGAAACGTATTGCCGCAGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACT
GCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAGCTTTAGGGCGATCACC
TGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTAGGGTGATC
TGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGC
TTCCTTAAGTAGTGTTTCTTCCACCTGTTTTGCTAATTTGCTAATATTCCTAGACCTAGA
AGATGTAAATATTGCAGGGCATCTGTATATATGTTGGGCAAGCGAATCCTTATTTGTTTA
GCATTG