Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0177300-00
CDS Infomation

cds chromosome:IRGSP-1.0:10:5334799:5336178:-1 gene:Os10g0177300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYKETIDE SYNTHASE 20 description:Similar to Chalcone and stilbene synthases, N-terminal domain containing protein. (Os10t0177300-00)
Sequence

CGAGGAGCTCATACGTGCCCACCCAGAGATCATCGACAAAAACCTGCCCTCCCTGAAGCT
CGTGTAGACATTGCCTCTATCGAGGTCCCTAAGCTCGCTGAGTCCGCTGCACGGAAGGCC
ATTACCGAGTGGGGCCGTCCGGCCACTGACATCACCTACCTCATCTTCAGCACCTACTCT
GGCTGGCGCGCCCCCAGCGCCGACCTTCAGCTAGCGACGCTCCTCGGCCTCCGCCCTACC
GTCTCCCGCACCATCCTCAGCCTCCACGGCTGCTCCGGCGGCAGTCGGGCACTCCAGCTC
GCCAAGGAGATCGCCGAGAACAACCATGGCGCGCGAGTCCTCGTAGCCCTCTCTGAGCTG
ACACTGGTATGCTTCTCAACCCCTGACGAAAGCAAAATTGTAGGCCATGGACTGTTCAGA
GATGGCGCTGGTGCGATCATCGTTGGCGCTAACCCCTTGGCCGATGGCGAGCGCCCGCTG
TTTGAGATGGTGGCCGCTTCACAGACCATGATTCCAGGAACCGAGCACGCACTGGGCTTG
CAGGCCACCGACAAAGGCATAGATTTCCATCTCTCTATCCAAGTGCTGACAGTGATAAAG
GACAACATCCATCAGTGCTTGCTCGATGCGTTCCAGTCAGTCGGAAACAAGGATCCTAAC
TGGAATGACCTCTTCTGGGCGGTGCACCCTGGTGGCCGTGCGATCCTTGACAATATAGAG
GGCAAGCTCCAGCTAGAGCCAGGGAAGCTTGCGGCGAGCCGCCACGTGCTGAGCGAGTAC
GGGAATATGAGTGGTGCGATGATCGCGTTCGTTCTTGATGAGCTGCGCCGCCGTCGGGAG
AAGGAAGAAGGCGTGCAACAACAGCCTGAGTGGGGAGTGATGCTGGCCTTTGGACCCGGA
ATCACAGTAGAGGCAATGGTGCTACGTAACCCATTCTCAACTGGTATAAACTAA

Peptide Sequence

PEP ID

Os10t0177300-00
PEP Infomation

pep chromosome:IRGSP-1.0:10:5334799:5336178:-1 gene:Os10g0177300 transcript:Os10t0177300-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYKETIDE SYNTHASE 20 description:Similar to Chalcone and stilbene synthases, N-terminal domain containing protein. (Os10t0177300-00)
Sequence

RGAHTCPPRDHRQKPALPEARVDIASIEVPKLAESAARKAITEWGRPATDITYLIFSTYS
GWRAPSADLQLATLLGLRPTVSRTILSLHGCSGGSRALQLAKEIAENNHGARVLVALSEL
TLVCFSTPDESKIVGHGLFRDGAGAIIVGANPLADGERPLFEMVAASQTMIPGTEHALGL
QATDKGIDFHLSIQVLTVIKDNIHQCLLDAFQSVGNKDPNWNDLFWAVHPGGRAILDNIE
GKLQLEPGKLAASRHVLSEYGNMSGAMIAFVLDELRRRREKEEGVQQQPEWGVMLAFGPG
ITVEAMVLRNPFSTGIN

Transcript Sequence

Transcript ID

Os10t0177300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:5334799:5336178:-1 gene:Os10g0177300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:POLYKETIDE SYNTHASE 20 description:Similar to Chalcone and stilbene synthases, N-terminal domain containing protein. (Os10t0177300-00)
Sequence

GCCGAAGGCCCTGCCACGGTCCTCGCTATTGGCACTGCAAACCCGGCAAACATATGTCCT
CAGGATGAGTTTACCGACTATTACTTCGGCCTGACCAAGAGCGAGCACCTTATTGAGCTT
AAGGACAAGATGAAGATAATATGTAAGCACATCAATTATTCCACTTGTCATCATCATTAT
ATGTTATTTTTCATTAACTCCAGTGAGAAAAATTGTCCAAACGTATGTACTAACTAATAC
AGATATGTGTTATTCCTTTTGCATATATATCAGGTCAAAAATCCGGCATAGAGAAGCGCT
ACATCCACCTTGACGAGGAGCTCATACGTGCCCACCCAGAGATCATCGACAAAAACCTGC
CCTCCCTGAAGCTCGTGTAGACATTGCCTCTATCGAGGTCCCTAAGCTCGCTGAGTCCGC
TGCACGGAAGGCCATTACCGAGTGGGGCCGTCCGGCCACTGACATCACCTACCTCATCTT
CAGCACCTACTCTGGCTGGCGCGCCCCCAGCGCCGACCTTCAGCTAGCGACGCTCCTCGG
CCTCCGCCCTACCGTCTCCCGCACCATCCTCAGCCTCCACGGCTGCTCCGGCGGCAGTCG
GGCACTCCAGCTCGCCAAGGAGATCGCCGAGAACAACCATGGCGCGCGAGTCCTCGTAGC
CCTCTCTGAGCTGACACTGGTATGCTTCTCAACCCCTGACGAAAGCAAAATTGTAGGCCA
TGGACTGTTCAGAGATGGCGCTGGTGCGATCATCGTTGGCGCTAACCCCTTGGCCGATGG
CGAGCGCCCGCTGTTTGAGATGGTGGCCGCTTCACAGACCATGATTCCAGGAACCGAGCA
CGCACTGGGCTTGCAGGCCACCGACAAAGGCATAGATTTCCATCTCTCTATCCAAGTGCT
GACAGTGATAAAGGACAACATCCATCAGTGCTTGCTCGATGCGTTCCAGTCAGTCGGAAA
CAAGGATCCTAACTGGAATGACCTCTTCTGGGCGGTGCACCCTGGTGGCCGTGCGATCCT
TGACAATATAGAGGGCAAGCTCCAGCTAGAGCCAGGGAAGCTTGCGGCGAGCCGCCACGT
GCTGAGCGAGTACGGGAATATGAGTGGTGCGATGATCGCGTTCGTTCTTGATGAGCTGCG
CCGCCGTCGGGAGAAGGAAGAAGGCGTGCAACAACAGCCTGAGTGGGGAGTGATGCTGGC
CTTTGGACCCGGAATCACAGTAGAGGCAATGGTGCTACGTAACCCATTCTCAACTGGTAT
AAACTAA