Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os10t0116900-01
CDS Infomation

cds chromosome:IRGSP-1.0:10:1085238:1089511:-1 gene:Os10g0116900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0116900-01);Hypothetical conserved gene. (Os10t0116900-02)
Sequence

ATGGCCGCGCCGGGGCCGGGGTGGGTGGTGCCGCCGCCGCCGCAGCCGCAGCCGCAGCAG
CAGCAGCAGGCGGTGGTGGTGGACGGCCGGGACGGCCTCGTCGCGTGGCTGCGCGGCGAG
TTCGCGGCGGCCAACGCCATCATCGACCTCCTCCTCGCCCACGCCCGCGACGCCGCCGAT
CCCGCCGGGTTCGACGCCGTTGCCGCCGCCGTCCAGCGCAGGCGGCACCACTGGGCCCCC
GTCCTCCACCTCCAGCATTACTTCCCCGTCACCGAGGTCGCCCTCGCGCTTCACCACGCC
GCCGCGCGCCAGGGGCCGCCGCCTCCTCCTCCGCCGCCGCGCCCCCCGAGCGGTAGCGCC
GGTGCCGAGGGAGATGATGCTGCGATTGCCAGTGGAGGTGTGAAGGAAGTGGAGACATCG
GCTGAAGCAACTCAGAATTCTCAGTTGGTTTCTCATATTTCACATGCTACAGAAGCCCAA
CCTCAGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGTGGTT
AATGAAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAAAGGG
TATGTAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGACTATG
CGGCGTAAACCAGGACTGGAAGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAAGGGT
CATGGAAGAGAAATTATTCAGCTTGGTCTTCCCATCACAGAAGGCCCTCCTGAAGATGAA
CATTTAAGAGAGGTAAAGGTGGATCCTATTCCTGGTGTGCTTCAAAATCTGTTTGATAGC
TTGGTTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAAT
GAGGGAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACA
CTCTGCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGC
GATCATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGA
AAGAGCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTA
AGTTTTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACT
CCCCCATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCA
ATTCATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGCAGTT
TCAACCCCTGGACTTCACCATATTCCATCCAATGGCATCCAGACAGTTTTCGTTGCACCA
CTTCCTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACA
GCCGCATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGT
ACAGGGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTA
AAACATGCTGATGCTAAACCATTTTTTCCACAAGAATCATCTGCCTCTTCATCTGGTGTA
AGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGAT
ATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCAT
GCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAG

Peptide Sequence

PEP ID

Os10t0116900-01
PEP Infomation

pep chromosome:IRGSP-1.0:10:1085238:1089511:-1 gene:Os10g0116900 transcript:Os10t0116900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0116900-01);Hypothetical conserved gene. (Os10t0116900-02)
Sequence

MAAPGPGWVVPPPPQPQPQQQQQAVVVDGRDGLVAWLRGEFAAANAIIDLLLAHARDAAD
PAGFDAVAAAVQRRRHHWAPVLHLQHYFPVTEVALALHHAAARQGPPPPPPPPRPPSGSA
GAEGDDAAIASGGVKEVETSAEATQNSQLVSHISHATEAQPQKGLHVISNVVPVPTCFVV
NEVIDGRMVNVLEGLKLYKGYVDLTEIGKVLSFVNEAKTMRRKPGLEGQTVVVAKRPMKG
HGREIIQLGLPITEGPPEDEHLREVKVDPIPGVLQNLFDSLVHQKVVPSSPDYCVIDIFN
EGDYSHPHHHPPWYGRPICTLCLTDCDMVFGHVIAADSRGDHAGPLKLSLSTGSVLVFEG
KSADIAKRALPATSKQRILLSFGKSVSRKHVQSESSLLITPPLTPPPMPWAAPLRPGNIA
IHPSSPKQLVYNPSNRVPAVSTPGLHHIPSNGIQTVFVAPLPITPKAVPFASAVTLPNST
AAWIAEAAPRPASPRLPLQGTGVFLPPGSGNPPPAQKLGVKHADAKPFFPQESSASSSGV
SARAHKANGSVSSKPTRKDDMAEAKPKCNGSSDGGSSVAHAKATGGLEEQNVVAK

Transcript Sequence

Transcript ID

Os10t0116900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:10:1085238:1089511:-1 gene:Os10g0116900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os10t0116900-01);Hypothetical conserved gene. (Os10t0116900-02)
Sequence

ATTCCATCAGAATTGGCGAAACCCTAGCAGCAGATTGCCCCGCCATGCTCTGAGCCCGCC
GACGATGGCCGCGCCGGGGCCGGGGTGGGTGGTGCCGCCGCCGCCGCAGCCGCAGCCGCA
GCAGCAGCAGCAGGCGGTGGTGGTGGACGGCCGGGACGGCCTCGTCGCGTGGCTGCGCGG
CGAGTTCGCGGCGGCCAACGCCATCATCGACCTCCTCCTCGCCCACGCCCGCGACGCCGC
CGATCCCGCCGGGTTCGACGCCGTTGCCGCCGCCGTCCAGCGCAGGCGGCACCACTGGGC
CCCCGTCCTCCACCTCCAGCATTACTTCCCCGTCACCGAGGTCGCCCTCGCGCTTCACCA
CGCCGCCGCGCGCCAGGGGCCGCCGCCTCCTCCTCCGCCGCCGCGCCCCCCGAGCGGTAG
CGCCGGTGCCGAGGGAGATGATGCTGCGATTGCCAGTGGAGGTGTGAAGGAAGTGGAGAC
ATCGGCTGAAGCAACTCAGAATTCTCAGTTGGTTTCTCATATTTCACATGCTACAGAAGC
CCAACCTCAGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGT
GGTTAATGAAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAA
AGGGTATGTAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGAC
TATGCGGCGTAAACCAGGACTGGAAGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAA
GGGTCATGGAAGAGAAATTATTCAGCTTGGTCTTCCCATCACAGAAGGCCCTCCTGAAGA
TGAACATTTAAGAGAGGTAAAGGTGGATCCTATTCCTGGTGTGCTTCAAAATCTGTTTGA
TAGCTTGGTTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTT
CAATGAGGGAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTG
TACACTCTGCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCG
AGGCGATCATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGA
GGGAAAGAGCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTT
ACTAAGTTTTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTAT
CACTCCCCCATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACAT
AGCAATTCATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGC
AGTTTCAACCCCTGGACTTCACCATATTCCATCCAATGGCATCCAGACAGTTTTCGTTGC
ACCACTTCCTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAG
TACAGCCGCATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCA
GGGTACAGGGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGG
CGTAAAACATGCTGATGCTAAACCATTTTTTCCACAAGAATCATCTGCCTCTTCATCTGG
TGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGA
TGATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGC
CCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTA
CAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAA
GTGGTTACAGGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAA
ATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAA
AGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGA
CCAATTATGATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGA
GCCTCCCATTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATAT
GATGCTATATATGTCATCTTTGTTGCATAACGAATC