Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0573100-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:22925577:22928730:-1 gene:Os09g0573100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin domain containing protein. (Os09t0573100-01)
Sequence

ATGGCCATGGCTGCCGCCGGCGACGAGGCGGAGATGGTCGAGGTGACGCTGCGCGCCGTC
GGCCCGTCCCGTCCCACCACCCTTCGCCTCCCTCCGTTTATCTCGGTTGCCGATCTGCGC
CGCCACATCGCTCACGACCGACATCTCCCACAAGACCGCCTCCGCCTGGTCCTGCGAGGA
AGGAATCTCCCGTGCCAAGACGACGCCCATGTCAACCTCCGCCACGGGGATAGTCTTATA
GTGGCCGTGGCACCTAAGCCACCTGCTAATCATCTCCGTGACGGTGATGGTGACGATGAC
GATGATGAAGAGGAAGAGCTGAAGTTCAAAATACCAGAAACAACCACCTGGTGGAAGAGA
AAATTTTTTATATTTCTTCGAGACAAATTGAGATTACCTGATATCTTGTTGATGGTGCTA
TTTTCTCTGGGTATCAAAGCATGGGTTCTTATCGCTATGTGGTTCCTTTTTGCACCTATT
GCTCAAATGTACGACGTTGGACCTTTATTTATACTTGGTACAGGCTTCTTGGTCATTCTT
TGTAATCTTGGAAGACGACAGCAAGGTGATGTCAGTGCATACTCCATATTTAATGAAGAC
TTCCGGGAGCTACCAGGAACGCTTAACGCGGAGCGCATCGATAGAGACATTCGGGCAGGC
CAATTTTGA

Peptide Sequence

PEP ID

Os09t0573100-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:22925577:22928730:-1 gene:Os09g0573100 transcript:Os09t0573100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin domain containing protein. (Os09t0573100-01)
Sequence

MAMAAAGDEAEMVEVTLRAVGPSRPTTLRLPPFISVADLRRHIAHDRHLPQDRLRLVLRG
RNLPCQDDAHVNLRHGDSLIVAVAPKPPANHLRDGDGDDDDDEEEELKFKIPETTTWWKR
KFFIFLRDKLRLPDILLMVLFSLGIKAWVLIAMWFLFAPIAQMYDVGPLFILGTGFLVIL
CNLGRRQQGDVSAYSIFNEDFRELPGTLNAERIDRDIRAGQF

Transcript Sequence

Transcript ID

Os09t0573100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:22925577:22928730:-1 gene:Os09g0573100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin domain containing protein. (Os09t0573100-01)
Sequence

GGAAGGGAGAGGGGAGTAGACAGACGGGGACAGATCAGAGTCAGGCATGGCCATGGCTGC
CGCCGGCGACGAGGCGGAGATGGTCGAGGTGACGCTGCGCGCCGTCGGCCCGTCCCGTCC
CACCACCCTTCGCCTCCCTCCGTTTATCTCGGTTGCCGATCTGCGCCGCCACATCGCTCA
CGACCGACATCTCCCACAAGACCGCCTCCGCCTGGTCCTGCGAGGAAGGAATCTCCCGTG
CCAAGACGACGCCCATGTCAACCTCCGCCACGGGGATAGTCTTATAGTGGCCGTGGCACC
TAAGCCACCTGCTAATCATCTCCGTGACGGTGATGGTGACGATGACGATGATGAAGAGGA
AGAGCTGAAGTTCAAAATACCAGAAACAACCACCTGGTGGAAGAGAAAATTTTTTATATT
TCTTCGAGACAAATTGAGATTACCTGATATCTTGTTGATGGTGCTATTTTCTCTGGGTAT
CAAAGCATGGGTTCTTATCGCTATGTGGTTCCTTTTTGCACCTATTGCTCAAATGTACGA
CGTTGGACCTTTATTTATACTTGGTACAGGCTTCTTGGTCATTCTTTGTAATCTTGGAAG
ACGACAGCAAGGTGATGTCAGTGCATACTCCATATTTAATGAAGACTTCCGGGAGCTACC
AGGAACGCTTAACGCGGAGCGCATCGATAGAGACATTCGGGCAGGCCAATTTTGAGCCCG
AAATCTGATTTACTGGGACGATGGGCTTAATGGGATTTGTACAGAAGGATAGTGACTCTT
CTTTGGTTCTGATCCTTTGTACCTGGAAAGACTTTTGAAAGAGGCCCTTAGCAGTGTGAA
TTTACATGTGTACTTCACAGATGGCCAGCATTAAGGTTGAATGGTTGAGATGCAATATGA
GTGAGGTTTGAAAGGAGGGATGCACACATACATTTACTAATAGATCAGATAAATCAAACC
GAGTCAATAGAAGCGCACGTATGTATGTCATGTAGGAGTATAGGTGAGATTTCAATCTAC
ATCAGGAATTCATGAAGTAAATGTATATTACCCATCATGCGTTAACATAAATATCAGATA
TTCAGATCC