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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0571400-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:22809907:22810986:1 gene:Os09g0571400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 19-3 description:Cyclophilin 1. (Os09t0571400-01)
Sequence

ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGC
CGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGC
CTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCT
GCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAAC
GGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGC
CACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAA
TTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAG
GTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGC
ACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA

Peptide Sequence

PEP ID

Os09t0571400-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:22809907:22810986:1 gene:Os09g0571400 transcript:Os09t0571400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 19-3 description:Cyclophilin 1. (Os09t0571400-01)
Sequence

MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGS
AFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQ
FFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN

Transcript Sequence

Transcript ID

Os09t0571400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:22809907:22810986:1 gene:Os09g0571400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 19-3 description:Cyclophilin 1. (Os09t0571400-01)
Sequence

CTCCTCATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGGCTA
AGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGC
CGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCG
CTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGG
TTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGG
CAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCT
GCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTC
CCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGG
CAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGG
CGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAA
CTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTT
GTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTAT
TTATAACTATGCTCTTAGCCCTCAATGTTATATAGC