Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0571100-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:22804668:22806066:1 gene:Os09g0571100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 28 description:Pectin lyase fold/virulence factor domain containing protein. (Os09t0571100-01)
Sequence

ATGAACAAGTGCAGGTCTAGCAGTAGCAGTAGCAATAGCAGGGCCTTGTATGCTCTCCTC
CTCACTTCTCTTATACTAACAGTAATAATATTGTACCTCCCGCCTCCACCTGATCCTCTT
TCCCAATCCCAATTCGAATTCGACCAACTAAAGCTTGACGATCATCCGCCGCCACCGCAG
CTGCACCGCCGCAGGACGAAGCGGTGCGCCGAGCACCTCAGGTGGGCGGCCTCCCTCGCC
TCTCAACACAATGCCACCCTCCTGCTCACCGTCGATCGCAACCAGGCCGCCGGCTGCGCC
AACTTCACCACCATCCAGAAGGCGGTGGACGCGGTGCCCGACTACGCCGCCACACGCACG
CTCATCGCCGTGGACGCCGGCATCTACAGGGAGAAGGTGGTGGTGTGGTCCAACAAGACG
GCCCTCACGCTGCACGGCCGCGGCAACCTCAACACCACCGTCGCCTGGAACGCCACCTCC
AACTCCACCGGCGGCAGCACCGTGTACAGCGCCACCTTCACCGTCCTCGCCCCCGCCTTC
GTCGCCTACAACATCACCTTCCAGAACACGTCGCCCCCGCCCGAGCCCGGGGACGCAGGG
GGGCAGGCGGTGGCGCTGAGGGTGGCCGGCGACGAGGCGGCGTTCCACTGGTGCGGGGTG
TACAGCGCGCAGGACACGCTGCTGGACGAGTCCGGGCGGCACCTGTTCCGCGGCTGCTAC
ATCGAGGGCTCCATCGACTTCATCTTCGGCAACGCACGATCCCTCTACGTGGGTTGCACC
ATAAGCTCCGTGGCCATGGCGAGCGCGACGGGGAATAAGGAAGTGACGGGGAGCGTGACG
GCGCAGGGGAGGGCGTCGGCGGCGGAGAGGACGGGGTTCGCGTTCGTGCGGTGCAGCGTG
GTGGGGACGGGGCAGGTGTGGCTGGGGAGGGCGTGGGGGCCGTACGCGACGGTGGTGTTC
GCGGAGACGTACCTCGGCGACGTGGTGGCGGCGGAGGGGTGGAACGACTGGGGCGACCCC
GGCAGGCGGCAGCAGGTGTGGTTCGCGGAGTACGCGTGCTGGGGCCCCGGATCCGCCACC
GCCGCCACCGGCAGGGTGTCCTACGCGCGGCAGCTTGACCAGCGCCAGGCCGCGCCCTTC
ATGGACGTCTCCTACATCGACGCCAACCAGTGGGCGCTGCCACCGTCGACGCCGGAACTC
TACGGATCGAGATATACTCCCAGCTAG

Peptide Sequence

PEP ID

Os09t0571100-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:22804668:22806066:1 gene:Os09g0571100 transcript:Os09t0571100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 28 description:Pectin lyase fold/virulence factor domain containing protein. (Os09t0571100-01)
Sequence

MNKCRSSSSSSNSRALYALLLTSLILTVIILYLPPPPDPLSQSQFEFDQLKLDDHPPPPQ
LHRRRTKRCAEHLRWAASLASQHNATLLLTVDRNQAAGCANFTTIQKAVDAVPDYAATRT
LIAVDAGIYREKVVVWSNKTALTLHGRGNLNTTVAWNATSNSTGGSTVYSATFTVLAPAF
VAYNITFQNTSPPPEPGDAGGQAVALRVAGDEAAFHWCGVYSAQDTLLDESGRHLFRGCY
IEGSIDFIFGNARSLYVGCTISSVAMASATGNKEVTGSVTAQGRASAAERTGFAFVRCSV
VGTGQVWLGRAWGPYATVVFAETYLGDVVAAEGWNDWGDPGRRQQVWFAEYACWGPGSAT
AATGRVSYARQLDQRQAAPFMDVSYIDANQWALPPSTPELYGSRYTPS

Transcript Sequence

Transcript ID

Os09t0571100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:22804668:22806066:1 gene:Os09g0571100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 28 description:Pectin lyase fold/virulence factor domain containing protein. (Os09t0571100-01)
Sequence

GATTTGCCCGATGCTTAATCGATCAGAGACAATGAAGCAACACGCGGGCTAGCTAGTATT
AGATCGACAAGGAGGAAAATGAACAAGTGCAGGTCTAGCAGTAGCAGTAGCAATAGCAGG
GCCTTGTATGCTCTCCTCCTCACTTCTCTTATACTAACAGTAATAATATTGTACCTCCCG
CCTCCACCTGATCCTCTTTCCCAATCCCAATTCGAATTCGACCAACTAAAGCTTGACGAT
CATCCGCCGCCACCGCAGCTGCACCGCCGCAGGACGAAGCGGTGCGCCGAGCACCTCAGG
TGGGCGGCCTCCCTCGCCTCTCAACACAATGCCACCCTCCTGCTCACCGTCGATCGCAAC
CAGGCCGCCGGCTGCGCCAACTTCACCACCATCCAGAAGGCGGTGGACGCGGTGCCCGAC
TACGCCGCCACACGCACGCTCATCGCCGTGGACGCCGGCATCTACAGGGAGAAGGTGGTG
GTGTGGTCCAACAAGACGGCCCTCACGCTGCACGGCCGCGGCAACCTCAACACCACCGTC
GCCTGGAACGCCACCTCCAACTCCACCGGCGGCAGCACCGTGTACAGCGCCACCTTCACC
GTCCTCGCCCCCGCCTTCGTCGCCTACAACATCACCTTCCAGAACACGTCGCCCCCGCCC
GAGCCCGGGGACGCAGGGGGGCAGGCGGTGGCGCTGAGGGTGGCCGGCGACGAGGCGGCG
TTCCACTGGTGCGGGGTGTACAGCGCGCAGGACACGCTGCTGGACGAGTCCGGGCGGCAC
CTGTTCCGCGGCTGCTACATCGAGGGCTCCATCGACTTCATCTTCGGCAACGCACGATCC
CTCTACGTGGGTTGCACCATAAGCTCCGTGGCCATGGCGAGCGCGACGGGGAATAAGGAA
GTGACGGGGAGCGTGACGGCGCAGGGGAGGGCGTCGGCGGCGGAGAGGACGGGGTTCGCG
TTCGTGCGGTGCAGCGTGGTGGGGACGGGGCAGGTGTGGCTGGGGAGGGCGTGGGGGCCG
TACGCGACGGTGGTGTTCGCGGAGACGTACCTCGGCGACGTGGTGGCGGCGGAGGGGTGG
AACGACTGGGGCGACCCCGGCAGGCGGCAGCAGGTGTGGTTCGCGGAGTACGCGTGCTGG
GGCCCCGGATCCGCCACCGCCGCCACCGGCAGGGTGTCCTACGCGCGGCAGCTTGACCAG
CGCCAGGCCGCGCCCTTCATGGACGTCTCCTACATCGACGCCAACCAGTGGGCGCTGCCA
CCGTCGACGCCGGAACTCTACGGATCGAGATATACTCCCAGCTAGCTAGGATCACACACA
CACACACACACGAGTTTTAATTTAATTTGATATTGATTTGTAAGACAAGGATGATAAAAA
CACAAGACTCAATTACAAT