Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0570300-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:22762936:22766952:1 gene:Os09g0570300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os09t0570300-01);Similar to Short-chain dehydrogenase Tic32. (Os09t0570300-02)
Sequence

ATGATGTCTTCTTGGTTGTTCCGGCGGAGTGGGCCCTCGGGCTTCTCGTGGGCCTCCACC
GCCGACCAAGTCACCGCCGGGCTCTCCGCCGCCGGCCTCACCGCCATCGTCACCGGCGCC
TCCAGCGGCATCGGCGCCGAGACGGCTCGCGTCCTCGCCATCCGCGGGGCACACGTCGTC
ATGGCCGTCCGCAACCTCGCCGCCGCGCAGCCCGTGCGCGACGCCATCCTCGCCGACGCC
CCTGCCGCCTCCCTCGACCTCATGGAGCTCGACCTCGCCTCCATGGACTCCGTCCGCGCC
TTCGCCTCCGACTTCGCCGCCAAGGGCCTCCCCCTCAATATCCTCATCAACAATGCAGGG
GTGATGGCAACTCCTTTCTCTCTCTCAAAGGATGGTATCGAGTTGCAATTTGCCACTAAC
CATGTTGGTCATTTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTCGT
GAATCAAATGTGGAAGGAAGAATCGTTAATGTTTCATCAGAGGGGCACAGGTTTGCATAT
CGGGAAGGCATCCGCTTTGCCAAGATAAATGACGAGTCGGAGTACAACTCCATTGGAGCA
TATGGGCAGTCAAAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAG
GATGAGGGTGTCAACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCACGAACCTT
CTTCGTCACCACAGTATCCTAGATGTTCTCCATCGGACACTTGGTAAATTGGTGCTTAAA
AATGCTCAGCAGGGGGCGGCCACCACTTGTTATGTTGCATTGCACCCACAGGTGAAGGGT
GTGTCCGGGAAGTACTTCAGTGACAGCAATGTGAACGAGGCGAGTGAGAAAGGCAATGAC
ATGGAGCTGGCCAAGAGGCTGTGGGAGTACAGCATCGAGCTCATCACCTGA

Peptide Sequence

PEP ID

Os09t0570300-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:22762936:22766952:1 gene:Os09g0570300 transcript:Os09t0570300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os09t0570300-01);Similar to Short-chain dehydrogenase Tic32. (Os09t0570300-02)
Sequence

MMSSWLFRRSGPSGFSWASTADQVTAGLSAAGLTAIVTGASSGIGAETARVLAIRGAHVV
MAVRNLAAAQPVRDAILADAPAASLDLMELDLASMDSVRAFASDFAAKGLPLNILINNAG
VMATPFSLSKDGIELQFATNHVGHFLLTHLLLETMKKTSRESNVEGRIVNVSSEGHRFAY
REGIRFAKINDESEYNSIGAYGQSKLANILHANELARRFKDEGVNITANSLHPGSIITNL
LRHHSILDVLHRTLGKLVLKNAQQGAATTCYVALHPQVKGVSGKYFSDSNVNEASEKGND
MELAKRLWEYSIELIT

Transcript Sequence

Transcript ID

Os09t0570300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:22762936:22766952:1 gene:Os09g0570300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Short-chain dehydrogenase Tic32. (Os09t0570300-01);Similar to Short-chain dehydrogenase Tic32. (Os09t0570300-02)
Sequence

GTTGTCCCACCCACACATCTTGCGGTTGCGCGGCGGAGAGAGAGATTGATGATGTCTTCT
TGGTTGTTCCGGCGGAGTGGGCCCTCGGGCTTCTCGTGGGCCTCCACCGCCGACCAAGTC
ACCGCCGGGCTCTCCGCCGCCGGCCTCACCGCCATCGTCACCGGCGCCTCCAGCGGCATC
GGCGCCGAGACGGCTCGCGTCCTCGCCATCCGCGGGGCACACGTCGTCATGGCCGTCCGC
AACCTCGCCGCCGCGCAGCCCGTGCGCGACGCCATCCTCGCCGACGCCCCTGCCGCCTCC
CTCGACCTCATGGAGCTCGACCTCGCCTCCATGGACTCCGTCCGCGCCTTCGCCTCCGAC
TTCGCCGCCAAGGGCCTCCCCCTCAATATCCTCATCAACAATGCAGGGGTGATGGCAACT
CCTTTCTCTCTCTCAAAGGATGGTATCGAGTTGCAATTTGCCACTAACCATGTTGGTCAT
TTTCTTTTGACTCATCTTCTCTTGGAGACAATGAAAAAGACCTCTCGTGAATCAAATGTG
GAAGGAAGAATCGTTAATGTTTCATCAGAGGGGCACAGGTTTGCATATCGGGAAGGCATC
CGCTTTGCCAAGATAAATGACGAGTCGGAGTACAACTCCATTGGAGCATATGGGCAGTCA
AAGCTTGCAAACATTTTGCATGCGAATGAACTTGCTAGGAGATTTAAGGATGAGGGTGTC
AACATAACTGCAAATTCTCTTCATCCTGGATCTATCATCACGAACCTTCTTCGTCACCAC
AGTATCCTAGATGTTCTCCATCGGACACTTGGTAAATTGGTGCTTAAAAATGCTCAGCAG
GGGGCGGCCACCACTTGTTATGTTGCATTGCACCCACAGGTGAAGGGTGTGTCCGGGAAG
TACTTCAGTGACAGCAATGTGAACGAGGCGAGTGAGAAAGGCAATGACATGGAGCTGGCC
AAGAGGCTGTGGGAGTACAGCATCGAGCTCATCACCTGACCTGACCTGACCTGATTCATG
AACTGAATGAGAGATACTATGTAATGTTGAAGTTTGAGAGAGTGCCTGTAAAGTAAATTG
TGGTAACTTAACTATGGCAGCTACCATCTGGTGTGCGTGCGTACGTACATCAAACCAACA
TGATACTAGTAGTGAGTAATAAGCATATGCGAATCTTCCTC