Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0565400-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:22513509:22517201:-1 gene:Os09g0565400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoprotein, type 6 family protein. (Os09t0565400-01);Similar to predicted protein. (Os09t0565400-02)
Sequence

ATGGCCGACGACGGCGACGCCGTCCTCTCCGACGTCGACGAGGAGGACCCTCTCCCGCCC
CCGCCCCCTCCCTCCACCTCCTCCTCCCAAAAATCCCCATCTCCTTCACAACCCCAACCC
CAACCCCATGCGCAGGCGCAGCGCCTGCACGACCTGGCCGCCGAGCTGGAGGAGGAGCGC
CGCCTCCGCCGCAAGGCCGAGGAATCCCTCGCCGAGGCCGAGAAGCGCTCCGAACGCGTC
AAGGCCTTAGCGCAGAACGTCCTCCGCAAGCACGACGACCTCAAGACCGAGGCCTCCACC
GCCTCCTCCATGCTCACTTCCGGCTTCGAGAGGATCTCCGCCAAGGCCTCCCCCTCCGCC
GCCGCCTCGCCCGCGCCGCTCCCCACTTCCCAAAAGTACTCCTCCGGCCTCCCCGCCATC
GCCTACGGCGTCCTCAAGCGCGCCAACGACATCGTCGATGACCTCCTCTCCCAGATCGAC
GCCGCCAACCGCGACCGCGACAGGGCGCGCGAGCAGATGGAGCACCGCAACTACCAGATC
GCCATCGAGGTCTCCGAGCTCGAGGCGTCCCTCGCGTCCAGGTCCGCCCACTGCGACTCC
CTCTCCAAGTCCCTCTCCGACAAGGACGCCGAGATCTCGGACCTCCGGAACAACCTCGCC
TTCCTGGAGACCAAGCTGGACGCGCAGAGGCCCGTGCTCGCCGACCAGATCGCCTGCGCC
TCCAAGGTGTACGACGAGATACGTGAGGTGGTCAAGCTAGTGGACGCGGATGCCGCGAGC
GCGCTCTCTGACTCGGTGTTCGTCTGGAAGGAGACCGACGTGGAGGAGAGCCTCAAGGTG
TCCCTGGAAGGGACCAAGATGGCGTACGATCTCGCTACCACTGCCCTGCACAAGGTTGGG
GCATGGGTTGATAAAAAGGAAAGCAAAGTGAGGGATTTGGAAGCGAGGGTGGATGAGCTA
TTGCGGGAGAAAGAGCACATTGGGGTGTTGCTCCGCAGCGCGCTGCAATCAAACACCAGC
GAGGTGCTCAAGGTTGCTGAGGATGGACTAAGGGAGGCCGGAATTGAGGTTGGGCTCAAA
GAGCGCAGGGAGCACAGGCCAGGGAGCATGGAGAAAGATGAAGTCTATACCCTAGCAGGG
GAATTGGAGAATAGCATGAAGGAGTCCCAAGTTAAGATTGTTGAGCTGCAACATCTTGTT
GAAGCACTAAGGGCGGAGTCTGGTCTACTTCGGACAAGACTGGAAGGGCAAGAAAAAGAG
ATTGCCCAGCTACGGAAGCAAATAAAGCATCTTGAAGAGAAGGAAAGGGTGGCAAATGAA
AGTGTTGAGGGTCTGATGATGGATGTAACAGCTGCTGAAGAGGAGATCAAAAGATGGAAG
ATGGCAGCAGAGGAAGAAGCTGAAGCTGGTAAAGCAATTGAGCAAGAGTTTGAAACTCAG
CTATCTTCCCTAAACAAGGAATTAGACGAAGCTAAACAGGCAATGCTGGAGCTAGAGAAC
AAACTGAAGTTCAAGGAAGAGACAGCGGCTGCAGCAATGGCGGCACGTGATGCCGCAGAG
AAATCATTGAAACTAGCGGATATGAGATCAACCAGGCTGCGAGAGAGACTGGAAGAGATC
AATAGGCAGCTCGAAGAATCAGACAACAGAAGGGACTCGAGCAATCGCAACGGGCATAGG
TATATGTGCTGGCCATGGCAATGGTTGGGGCTGAACTATGTGCGATTGCCACCGACAGAG
GCAGATCAAACCTCCAACGAGATGGAGCTATCTGAACCTCTGATATAG

Peptide Sequence

PEP ID

Os09t0565400-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:22513509:22517201:-1 gene:Os09g0565400 transcript:Os09t0565400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoprotein, type 6 family protein. (Os09t0565400-01);Similar to predicted protein. (Os09t0565400-02)
Sequence

MADDGDAVLSDVDEEDPLPPPPPPSTSSSQKSPSPSQPQPQPHAQAQRLHDLAAELEEER
RLRRKAEESLAEAEKRSERVKALAQNVLRKHDDLKTEASTASSMLTSGFERISAKASPSA
AASPAPLPTSQKYSSGLPAIAYGVLKRANDIVDDLLSQIDAANRDRDRAREQMEHRNYQI
AIEVSELEASLASRSAHCDSLSKSLSDKDAEISDLRNNLAFLETKLDAQRPVLADQIACA
SKVYDEIREVVKLVDADAASALSDSVFVWKETDVEESLKVSLEGTKMAYDLATTALHKVG
AWVDKKESKVRDLEARVDELLREKEHIGVLLRSALQSNTSEVLKVAEDGLREAGIEVGLK
ERREHRPGSMEKDEVYTLAGELENSMKESQVKIVELQHLVEALRAESGLLRTRLEGQEKE
IAQLRKQIKHLEEKERVANESVEGLMMDVTAAEEEIKRWKMAAEEEAEAGKAIEQEFETQ
LSSLNKELDEAKQAMLELENKLKFKEETAAAAMAARDAAEKSLKLADMRSTRLRERLEEI
NRQLEESDNRRDSSNRNGHRYMCWPWQWLGLNYVRLPPTEADQTSNEMELSEPLI

Transcript Sequence

Transcript ID

Os09t0565400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:22513509:22517201:-1 gene:Os09g0565400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Lipoprotein, type 6 family protein. (Os09t0565400-01);Similar to predicted protein. (Os09t0565400-02)
Sequence

AAGTGATGAAGTAACCCACTCCTCGAAGGCTTGTGTTCCGCCGCGTCGCCGTCGCAACCG
AATCGCATCGCATCGCATCGGTCCAAACTCCCAACCGGCGACGGCGAGGCCGACGAAACC
CAAACCCAGCTAAGCTTCCCTCTTCGATTCCCCCCATGGCCGACGACGGCGACGCCGTCC
TCTCCGACGTCGACGAGGAGGACCCTCTCCCGCCCCCGCCCCCTCCCTCCACCTCCTCCT
CCCAAAAATCCCCATCTCCTTCACAACCCCAACCCCAACCCCATGCGCAGGCGCAGCGCC
TGCACGACCTGGCCGCCGAGCTGGAGGAGGAGCGCCGCCTCCGCCGCAAGGCCGAGGAAT
CCCTCGCCGAGGCCGAGAAGCGCTCCGAACGCGTCAAGGCCTTAGCGCAGAACGTCCTCC
GCAAGCACGACGACCTCAAGACCGAGGCCTCCACCGCCTCCTCCATGCTCACTTCCGGCT
TCGAGAGGATCTCCGCCAAGGCCTCCCCCTCCGCCGCCGCCTCGCCCGCGCCGCTCCCCA
CTTCCCAAAAGTACTCCTCCGGCCTCCCCGCCATCGCCTACGGCGTCCTCAAGCGCGCCA
ACGACATCGTCGATGACCTCCTCTCCCAGATCGACGCCGCCAACCGCGACCGCGACAGGG
CGCGCGAGCAGATGGAGCACCGCAACTACCAGATCGCCATCGAGGTCTCCGAGCTCGAGG
CGTCCCTCGCGTCCAGGTCCGCCCACTGCGACTCCCTCTCCAAGTCCCTCTCCGACAAGG
ACGCCGAGATCTCGGACCTCCGGAACAACCTCGCCTTCCTGGAGACCAAGCTGGACGCGC
AGAGGCCCGTGCTCGCCGACCAGATCGCCTGCGCCTCCAAGGTGTACGACGAGATACGTG
AGGTGGTCAAGCTAGTGGACGCGGATGCCGCGAGCGCGCTCTCTGACTCGGTGTTCGTCT
GGAAGGAGACCGACGTGGAGGAGAGCCTCAAGGTGTCCCTGGAAGGGACCAAGATGGCGT
ACGATCTCGCTACCACTGCCCTGCACAAGGTTGGGGCATGGGTTGATAAAAAGGAAAGCA
AAGTGAGGGATTTGGAAGCGAGGGTGGATGAGCTATTGCGGGAGAAAGAGCACATTGGGG
TGTTGCTCCGCAGCGCGCTGCAATCAAACACCAGCGAGGTGCTCAAGGTTGCTGAGGATG
GACTAAGGGAGGCCGGAATTGAGGTTGGGCTCAAAGAGCGCAGGGAGCACAGGCCAGGGA
GCATGGAGAAAGATGAAGTCTATACCCTAGCAGGGGAATTGGAGAATAGCATGAAGGAGT
CCCAAGTTAAGATTGTTGAGCTGCAACATCTTGTTGAAGCACTAAGGGCGGAGTCTGGTC
TACTTCGGACAAGACTGGAAGGGCAAGAAAAAGAGATTGCCCAGCTACGGAAGCAAATAA
AGCATCTTGAAGAGAAGGAAAGGGTGGCAAATGAAAGTGTTGAGGGTCTGATGATGGATG
TAACAGCTGCTGAAGAGGAGATCAAAAGATGGAAGATGGCAGCAGAGGAAGAAGCTGAAG
CTGGTAAAGCAATTGAGCAAGAGTTTGAAACTCAGCTATCTTCCCTAAACAAGGAATTAG
ACGAAGCTAAACAGGCAATGCTGGAGCTAGAGAACAAACTGAAGTTCAAGGAAGAGACAG
CGGCTGCAGCAATGGCGGCACGTGATGCCGCAGAGAAATCATTGAAACTAGCGGATATGA
GATCAACCAGGCTGCGAGAGAGACTGGAAGAGATCAATAGGCAGCTCGAAGAATCAGACA
ACAGAAGGGACTCGAGCAATCGCAACGGGCATAGGTATATGTGCTGGCCATGGCAATGGT
TGGGGCTGAACTATGTGCGATTGCCACCGACAGAGGCAGATCAAACCTCCAACGAGATGG
AGCTATCTGAACCTCTGATATAGTTGTGCCATATCTATACAGATTGAAGAAATACACGAC
ATTTTGAAAGGAAAAAAAAAACGTGAGAAGGAGATTTCATTTTTTTTAATTTGTGTAGAT
GTTCGGGAAAATTGTTAATGCTTGTGCAAAAACTCACGAGGGTGTTAGATGCGGCGGTGC
AATTGTAAAATCATGCAGTTGGGATTATAGTTAAGCTGTCAATAAGTTCATCTTTAAACA
AAAGTGGAGTAATTTCT