Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0560900-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:22287181:22291728:-1 gene:Os09g0560900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-like domain containing protein. (Os09t0560900-01)
Sequence	ATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTC GACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGC CACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAG TCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTT GGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCT TCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCA GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCT GCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGG TTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCA CTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAG ACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAA CCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCA TCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGA TATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAAT AATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAA GCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACT AGCCAGGTAAGTTCTGATTTTTATAATTTTATATCTGTAATATTAATGATATGTGAAAAA AACCAAGTTGAAGTTCATGGGGATGCTCTGAACTGGAATATTGTGTAA

Peptide Sequence

PEP ID	Os09t0560900-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:22287181:22291728:-1 gene:Os09g0560900 transcript:Os09t0560900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-like domain containing protein. (Os09t0560900-01)
Sequence	MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKE SVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNP AGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPAPPPQPWFTQPVVSVPQMASGLAPQQP LFPIQNMPAPMTSAPANLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVA SVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDE AMSMEERRLSLPKYQVHDETSQVSSDFYNFISVILMICEKNQVEVHGDALNWNIV

Transcript Sequence

Transcript ID	Os09t0560900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:22287181:22291728:-1 gene:Os09g0560900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-like domain containing protein. (Os09t0560900-01)
Sequence	ACCCCACACGCCAGCCTCCCGATCCGACACCAAAGGAGAGAGCCGCCTCGCCTTCGTCTT CGTCTTCCCCCCGCCGCGCTCGTGCCCTCGCCTCGCCTCGCCTCGCCGAAACCCTAACCC TAGAATCGTCGATCGCCCGCGAGAGAGGAGGGGGAGGGGGACGAGGGGGAACCGCGCGTG ATGGGGAAGAAGAAGAAGCGCGTGGAGAAGGTGTTCTGCTACTACTGCGACCGCGAGTTC GACGACGAGAAGATCCTCGTGCAGCACCAGAAGGCCAAGCACTTCAAGTGCCACGTCTGC CACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAG TCCGTCACCAAGGTTCCCAATGCAAAGCCTGAGAGGGAATCAACAGAGATTGAGATCTTT GGGATGCAAGGGATTCCTCCAGATGTGTTGGCCGCCCACTATGGAGAAGAGGAAGACCCT TCATCGAAGGTAGCCAAAGTGGAAGTGCCATCGCTAAGGCCTCCTGTTATGCCCAATCCA GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATGTATAACCCT GCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGG TTTACACAACCAGTAGTTTCGGTTCCTCAAATGGCTTCTGGGCTTGCACCACAACAGCCA CTATTTCCAATTCAAAACATGCCTGCTCCTATGACATCAGCACCTGCAAATTTACTTCAG ACTTCGTTCCCTATGGCCCATGTTGGAGTACCTTCACCTGTTACCCCTCAGGTGTCACAA CCTCTCTTTCCTGTCAGTACATCTGCTGGAAACGGTGCAGTAAGTTCTCCATATGTAGCA TCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAGTTGCTCCTGCAGGAGTAGGA TATGCAGCTACTAACCAAGGTACAGGAGGTCCAGCGGCTGTACCTCCACCCGCTTCTAAT AATAAAGCACCAGCCACCCAACCTGGTGCAAATGAAGTCTATCTGGTGTGGGATGATGAA GCAATGTCAATGGAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACT AGCCAGGTAAGTTCTGATTTTTATAATTTTATATCTGTAATATTAATGATATGTGAAAAA AACCAAGTTGAAGTTCATGGGGATGCTCTGAACTGGAATATTGTGTAAGTGTTCATTCTA GGGTATAGAGTAAAGTAAAAATTTTAGGCACTTATGAATTGCATGATACGCCTTGTGTTC TAAAATTGGGTTTCCATCCCTTTAGTTTGTGCGTCAGAAATTTCATTTTGTTTCTGTTAC AATTGGTCCTGTATTACCTTAGTATTGCATTCAATAACATTTGAAGACCATTCACTGTGC TTTGATTGCTTGTGCATAAAGAGTAAATACAGCATATCAGCTTGCTTTTGCACCAGCATG ATGTGTCAAGTTCATGTCGACACATGTAGAGAAATTTGACACGCTGCAATTTGTAACCTC AGTATTTGGTATTATAAGTAATTCTTCTGAGCCCATTAGCGTGATATGGGAGTTAAGACG ATTCTCTACCTTCAACCATCTTTCTCTAAATAAATCATATTGAGAGTTTATATCCAGTCC TTCGCTATTTCCCTATGTTTTCTGGCATCTCTTGTCTAGTGATGACAAATCCATCATATG CTTTCCACCTTCAAAATCTGTACTTTGCGTGCTGCTGATCAACTAAAAAAGGAATCTTGC GCATCTTTGATACTTCACTATGTTATTCTCATTAGGTAGAAGGCACAAATCCAGTCGTGT ATGTGCTGAATGTTAGGGATACTTCACTAAGAACATACTTAATTGTGAACTTTGATAAGT GGGATGTTAAGTTTGTCAATTTTAGGCTTTTCCTGAACATTAGATATCAAGTTATCTAAT GTGTGTGGGAATAGGAAATATTTTCCACTGGTAGTTGCACACTGAGATGTTTCCTATTAT ATTCTACCTTGCATTTTCATGGCATATCCTTGGTGATTTCTTGCTGATGTCGTGCACGTC AGGAGTTCCAAGTAGGTATTTACATTGTTCTACCTGCTAGTAAGTTTTTTACAATCTGAC AAATCTCATGGTGCTAATTGACTTGAGGGTTATCGGCCAAGCCCTGGACAGTTCACAAAT ATGTATGTATTGATTTCAATTGAGCATCATTATTTTATTGATTACGATTCACCACATGCA AATATGGGTTTGTAACAAGAACTAGGTGGCTGAGCTTCTGCCAATACCGTAACATTTATT GTAACTTAATTTTGGTCGAGATTGTGCCAAGAATTTGGTTCCAGGTCAGCTTTCATTTTG GCCCGTGAGCCTGGTACTTATGTTCAAAGAGAAGAGATTAACTGCTTTTTTTTTTTGTTC TTAATCATGCCAATCATATCTAACACCGTCTCTCTTCTCCCACAATGTGTGAACAGATGA ACTCAGTTGATGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTTGCTGGACGCATGG CCCTGTAAAACAAATTGAACACATGTCTCGTAAATTGCCCCTATGCAATTCACTGACATA TTCGCCTATCTGGGCGAGCATAGGAGTAGCGCCTACAGTCGGTGATTCCCCGATTCCTGT TCTCCATTTGTTTAGCTAGTGACTGGAGGTACTGTGTGCAGTCAAAGGAATATGTTGTTC TGACTTGGAAAGCTTTGAATGTATCTTTCCACCCGAGTGAAGATGTTAGTCTAGAACCCA TTTTCCCATTGTCGCCTGAAGAAAATGTGATTTGTTGTCAACTCTGGAAATCTCATCATG AATTAGCAGAATCAGTTTCAGAGGCATGATGTGTATTCATTAATTTGATGGCACATGAGC GCCTACTAATAATAATTTATTGGTATTGATGC