Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0558600-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:22202108:22204167:1 gene:Os09g0558600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os09t0558600-01)
Sequence

ATGCTCAGCAACGGCGGCCACCAAATCCAGGTCACCATCTGCGTCGCGCCGCCGCCGCTC
GTCTCCTACATCTGCGCCTGGTCCCCCACCACCCACCCCGCCGAGCTCTTCGACACGGAG
CCCACCGTCGAGGCCGTCGACGCCGACCTCCTCCTCCTCCGCATCCACGTCTCGCTCAAC
CATGTCCACGACCTCGTCTACCAGGCATCCATGTTGCCATCGCTGACGCTCATGCCCAGC
CAAGATCCTTACCTGCACGAGCCCAACTGCATCGCGCTCATCCCCCGCTCCTCCCATGGC
TTCTACATCTCCACGCTCGACACGGATCTCCGCAGTGGGATTGGGCGATACAACCTCTGC
CTCTTCGACTCCACCAACTCCAAATGGAGCCATGAATCGCTCTCTCTGGATCAGCTGCGC
AATCCGCCTGACAAAAACGAGGTGCTCCATATCACGGAGAAGGTGATCACCTTCATCAAC
GATCCACATCTGGTTGCCTTCGTTGATCTCTGGCGGGGCATCATCATCTGTGACATACTT
GACACCAAAACTCAAACTGCAAGCTATGTGCCGATGCTCAAGGAGATCATCAACCTCCGC
AGAACCCGAGCATCGTCGATCACCAGGGACATTGCTGTCGTCAATGGCCGCCTCACCGTC
GTCAGGCTCACCACTGTCTTTGATCCAGATATCAATGGTTGGGACTGGGATCTGTCCACA
TGGAGCAGGGCAGTGGATTGTTTGGAGCAGGAGGATTGGCGCGAGGACTCTCTGGTCGAG
GCCTCTGACATCTTAATCGACCACAACATCTGCAACGTTGAGCTCTTGCCTAAGATACAG
GGGCAACCTACCATGGCTAAACTCCACGTTGCTCTTCCCACTCTCAGCTTGACTGATGCT
CAGGTTGTTTATGTCATGGGCAAGGTTAACGAATCCGATGAAAAGGCTGTGCTGCTGTCT
ATTGACATGGCCAACAGAAGGCTTGATGCAGTATCAGTGTATGACGCTGCAAGAATCCTC
CACTACTTTGATGTCTGCTACACGCAGTCTACCATCTTCCGATATTCCGCCCCTTCTTCA
GGTTTAAATGGAAACCTGAAACGACCAGGGAAGTTCCCTATGCCATATCCTCGCAAGCAA
CAGGCTGTAAATGAGCCATTTCTTCCGGATGCTGGGAGAGGTTTAGAAACTGAAGATAGG
GATACTATGGACTGGGAGTAG

Peptide Sequence

PEP ID

Os09t0558600-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:22202108:22204167:1 gene:Os09g0558600 transcript:Os09t0558600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os09t0558600-01)
Sequence

MLSNGGHQIQVTICVAPPPLVSYICAWSPTTHPAELFDTEPTVEAVDADLLLLRIHVSLN
HVHDLVYQASMLPSLTLMPSQDPYLHEPNCIALIPRSSHGFYISTLDTDLRSGIGRYNLC
LFDSTNSKWSHESLSLDQLRNPPDKNEVLHITEKVITFINDPHLVAFVDLWRGIIICDIL
DTKTQTASYVPMLKEIINLRRTRASSITRDIAVVNGRLTVVRLTTVFDPDINGWDWDLST
WSRAVDCLEQEDWREDSLVEASDILIDHNICNVELLPKIQGQPTMAKLHVALPTLSLTDA
QVVYVMGKVNESDEKAVLLSIDMANRRLDAVSVYDAARILHYFDVCYTQSTIFRYSAPSS
GLNGNLKRPGKFPMPYPRKQQAVNEPFLPDAGRGLETEDRDTMDWE

Transcript Sequence

Transcript ID

Os09t0558600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:22202108:22204167:1 gene:Os09g0558600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Domain of unknown function DUF1618 domain containing protein. (Os09t0558600-01)
Sequence

AAGCATCTCACACTGCGCCCGCCCTGCCACGGCGGCGGCGATGGCGATGGCGATGGCGGT
CACCCAGACTGGATTCTCGTCGACGTCCAGGCCTACATCGCCGACCGCCGGAACGCCACC
ACCGCCACCGCCATGCTCAGCAACGGCGGCCACCAAATCCAGGTCACCATCTGCGTCGCG
CCGCCGCCGCTCGTCTCCTACATCTGCGCCTGGTCCCCCACCACCCACCCCGCCGAGCTC
TTCGACACGGAGCCCACCGTCGAGGCCGTCGACGCCGACCTCCTCCTCCTCCGCATCCAC
GTCTCGCTCAACCATGTCCACGACCTCGTCTACCAGGCATCCATGTTGCCATCGCTGACG
CTCATGCCCAGCCAAGATCCTTACCTGCACGAGCCCAACTGCATCGCGCTCATCCCCCGC
TCCTCCCATGGCTTCTACATCTCCACGCTCGACACGGATCTCCGCAGTGGGATTGGGCGA
TACAACCTCTGCCTCTTCGACTCCACCAACTCCAAATGGAGCCATGAATCGCTCTCTCTG
GATCAGCTGCGCAATCCGCCTGACAAAAACGAGGTGCTCCATATCACGGAGAAGGTGATC
ACCTTCATCAACGATCCACATCTGGTTGCCTTCGTTGATCTCTGGCGGGGCATCATCATC
TGTGACATACTTGACACCAAAACTCAAACTGCAAGCTATGTGCCGATGCTCAAGGAGATC
ATCAACCTCCGCAGAACCCGAGCATCGTCGATCACCAGGGACATTGCTGTCGTCAATGGC
CGCCTCACCGTCGTCAGGCTCACCACTGTCTTTGATCCAGATATCAATGGTTGGGACTGG
GATCTGTCCACATGGAGCAGGGCAGTGGATTGTTTGGAGCAGGAGGATTGGCGCGAGGAC
TCTCTGGTCGAGGCCTCTGACATCTTAATCGACCACAACATCTGCAACGTTGAGCTCTTG
CCTAAGATACAGGGGCAACCTACCATGGCTAAACTCCACGTTGCTCTTCCCACTCTCAGC
TTGACTGATGCTCAGGTTGTTTATGTCATGGGCAAGGTTAACGAATCCGATGAAAAGGCT
GTGCTGCTGTCTATTGACATGGCCAACAGAAGGCTTGATGCAGTATCAGTGTATGACGCT
GCAAGAATCCTCCACTACTTTGATGTCTGCTACACGCAGTCTACCATCTTCCGATATTCC
GCCCCTTCTTCAGGTTTAAATGGAAACCTGAAACGACCAGGGAAGTTCCCTATGCCATAT
CCTCGCAAGCAACAGGCTGTAAATGAGCCATTTCTTCCGGATGCTGGGAGAGGTTTAGAA
ACTGAAGATAGGGATACTATGGACTGGGAGTAGTTATGTAATTTGGAGCTGAAACCTGAA
TAGACATAAATTGATCACAGCTGTTTATTTTGCTTCT