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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0554200-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:21956407:21957337:-1 gene:Os09g0554200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0554200-01)
Sequence

ATGCGTCACTTGCTGCAGTCGTCGGAGCACCTGACCGCCGCGACGGCGACGGCGGCGGCG
TCGGGCGGCCGGGGCGTCCACACGGACACGTTCCTCATCCTCGCCGCCGTGCTCTGCTTC
CTGCTCTGCGTCGTCGGGCTGGCGCTGGTGGCGCGGTGCTCGCGGCTGTGCAACCCGTCG
TCGTTCGCCGTCGAGGCGGAGGAGGCAATGCCCCCGGCGCCATGCAAGGGGCTCAAGAGG
AAGGCGCTGCTGTCGCTGCCGACCGTGTCGTTCGCCGAGGCGGCGGCGGCGGAGGAGGAG
GAGGAGCGGCCGGAGTGCGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGC
GTGCTCCCGCCGTGCGGCCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCC
ACCTCCACCTGCCCCTCCTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCA
GTCACCGCCGCCGCCACCGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCG
TCGTCACAGCCACCGCAACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTG
CCGTAG

Peptide Sequence

PEP ID

Os09t0554200-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:21956407:21957337:-1 gene:Os09g0554200 transcript:Os09t0554200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0554200-01)
Sequence

MRHLLQSSEHLTAATATAAASGGRGVHTDTFLILAAVLCFLLCVVGLALVARCSRLCNPS
SFAVEAEEAMPPAPCKGLKRKALLSLPTVSFAEAAAAEEEEERPECAICLAEFARGDEVR
VLPPCGHGFHAACVDVWLVSTSTCPSCRRAIVVLAAPSPAVTAAATDPPPPCCAADAAQA
SSQPPQPTGASDRGGCRTSVP

Transcript Sequence

Transcript ID

Os09t0554200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:21956407:21957337:-1 gene:Os09g0554200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0554200-01)
Sequence

ATTGCCTTCTCCATTTTTCACCATTTTTAGGTCAGTGTATTGCTTAACTGGCCCCTCGTC
GGCACAGTGGTTGGCAGTGCTCTCAGTCTCACCTTCACCTACCATGCGTCACTTGCTGCA
GTCGTCGGAGCACCTGACCGCCGCGACGGCGACGGCGGCGGCGTCGGGCGGCCGGGGCGT
CCACACGGACACGTTCCTCATCCTCGCCGCCGTGCTCTGCTTCCTGCTCTGCGTCGTCGG
GCTGGCGCTGGTGGCGCGGTGCTCGCGGCTGTGCAACCCGTCGTCGTTCGCCGTCGAGGC
GGAGGAGGCAATGCCCCCGGCGCCATGCAAGGGGCTCAAGAGGAAGGCGCTGCTGTCGCT
GCCGACCGTGTCGTTCGCCGAGGCGGCGGCGGCGGAGGAGGAGGAGGAGCGGCCGGAGTG
CGCCATCTGCCTCGCCGAGTTCGCGCGCGGCGACGAGGTCCGCGTGCTCCCGCCGTGCGG
CCACGGCTTCCACGCCGCCTGCGTCGACGTCTGGCTCGTGTCCACCTCCACCTGCCCCTC
CTGCCGCCGCGCCATCGTCGTCCTCGCGGCGCCGTCGCCTGCAGTCACCGCCGCCGCCAC
CGACCCCCCGCCGCCGTGCTGCGCCGCCGACGCGGCACAGGCGTCGTCACAGCCACCGCA
ACCCACCGGCGCCAGCGACCGCGGCGGCTGCCGGACATCGGTGCCGTAGAGCTCCAGCTC
TCTCTCGCTCGCGTACGTGCATCATTCGATTGTACATACACACACACCTAGCAAAAACGT
GAATAGTAGATACGTGTTCCGAGAGATTTTTTCTTGTACTACGCAGCAATGCAACTGTAG
TAGATACATGTGTTCTGTAAATACATGCATGTACACATCTCTGTTAATTAACCATCATTT
TCCCTTCTTTTTCGAACGATAATTAACCGTC