Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0548300-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:21681127:21687492:1 gene:Os09g0548300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os09t0548300-01)
Sequence	ATGGAGCTCGCTGGCGGCGGGACGGGGGTCGTGCGGCAGCGCGCCGAGCCGCTGGGTGCT GGCCTCCTACTACGCGGCGGCGGGCGGAGTGTGGGGGGAGGAGGGATCGGCTGCGCCCGT CGCGCCACCCTGCGGGGGCTCGCGCTGTCTCCCCTCGCGAGACGGGCGGTCTCGGCCGCG GGTGGGCACTTCCTCCCCAGGCGCGCCGTTCGCGCGGCGGCCGCCGCCGGCGATGGGGGA TTCTACGGCGAGGAGGATGCCGCCAGCGACCAGCCGTTTCCGGCGCGCGCGTCTCCCTCC GATGACGCGAACGATTCTACCGCGGTGCGCAGTTTAGGTGGGGATCATCCTGGAGAAATC AAGAAGGAGCTATTGAATCTGGCTTTACCGGCCATAGTTGGACAAGCAATCGATCCTGTG GCGCAGCTGTTAGAGACTGCATATATTGGTCGTTTAGGTCCTGTAGAGCTTGCCTCAGCT GCCGTGGGTGTGTCAGTCTTCAATATTATATCAAAACTGTTTAACATCCCACTCTTAAGC ATCACAACCTCATTTGTGGCTGAAGATGTTGCAAGACATGATTCCGATCAGTTTACTTCA GAAGGGAACATGTCTAGTGAGAGTGGAGGAAGGAAGAGACTCCCCTCCATTTCTTCAGCT ATACTTTTGGCTGCTGCAATTGGTGTCATTGAGGCCTCAGCTTTGATTCTGGGGTCTGAA ATACTCCTCAGCATTATGGGTGTGTCACATGCGTCAACCATGCATAGTCCTGCAAAGTTG TTTCTTTCTTTAAGGGCACTTGGTGCTCCTGCCGTAGTGGTTTCATTGGCTATTCAAGGT ATCTTTCGTGGATTGAAAGACACAAAGACACCTCTACTTTACAGTGGCTTGGGCAACATC TCAGCTGTGCTTCTACTTCCCTTTCTCGTGTATTCGCTGAACCTTGGATTAAATGGAGCA GCTCTCGCAACTATTGCTTCACAGTATCTTGGTATGTTTCTGCTCCTTTGGTCTTTAAGC AAAAGAGCAGTTCTACTGCCTCCAAAAATTGAAGACCTTGATTTCGTTGGGTACATAAAA TCTGGTGGCATGCTATTAGGGAGAACTCTTTCAGTTCTTATAACAATGACCCTTGGAACT GCAATGGCTGCTAGGCAAGGCACAATAGCCATGGCTGCTCATCAAATATGTCTACAGGTT TGGCTGGCGGTATCATTACTTTCGGATGCATTGGCTGTTTCTGCCCAGGCATTGATTGCA AGTTCTTTTGCCAAGCTTGACTATGAAAAGGTCAAGGAGGTCACATACTATGTCTTGAAG ATAGGACTGCTTGTTGGTGCAGCTTTAGCCCTTCTTCTGTTTGCCTCTTTTGGTAGAATT GCAGAACTGTTCTCCAAAGATCCTATGGTTCTACAAATTGTTGGGAGTGGTGTTCTGTTT GTTAGTGCCAGCCAACCAATTAATGCCCTAGCTTTTATCTTCGATGGACTTCACTTCGGT GTCTCAGACTTCTCATATTCTGCTTCTTCAATGATTACTGTTGGGGCAATATCTTCTTTA TTTTTGCTATATGCTCCCAAAGTTTTTGGCCTCCCTGGGGTTTGGGCTGGGCTGGCTCTT TTCATGGGTTTGCGCATGACTGCAGGATTTTTGAGATTGGGTTCGAGAGCAGGTCCTTGG TGGTTTTTGCACCAGAAAGAGCCAACATACAAATTACACTCAAGTACATGTTGA

Peptide Sequence

PEP ID	Os09t0548300-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:21681127:21687492:1 gene:Os09g0548300 transcript:Os09t0548300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os09t0548300-01)
Sequence	MELAGGGTGVVRQRAEPLGAGLLLRGGGRSVGGGGIGCARRATLRGLALSPLARRAVSAA GGHFLPRRAVRAAAAAGDGGFYGEEDAASDQPFPARASPSDDANDSTAVRSLGGDHPGEI KKELLNLALPAIVGQAIDPVAQLLETAYIGRLGPVELASAAVGVSVFNIISKLFNIPLLS ITTSFVAEDVARHDSDQFTSEGNMSSESGGRKRLPSISSAILLAAAIGVIEASALILGSE ILLSIMGVSHASTMHSPAKLFLSLRALGAPAVVVSLAIQGIFRGLKDTKTPLLYSGLGNI SAVLLLPFLVYSLNLGLNGAALATIASQYLGMFLLLWSLSKRAVLLPPKIEDLDFVGYIK SGGMLLGRTLSVLITMTLGTAMAARQGTIAMAAHQICLQVWLAVSLLSDALAVSAQALIA SSFAKLDYEKVKEVTYYVLKIGLLVGAALALLLFASFGRIAELFSKDPMVLQIVGSGVLF VSASQPINALAFIFDGLHFGVSDFSYSASSMITVGAISSLFLLYAPKVFGLPGVWAGLAL FMGLRMTAGFLRLGSRAGPWWFLHQKEPTYKLHSSTC

Transcript Sequence

Transcript ID	Os09t0548300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:21681127:21687492:1 gene:Os09g0548300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os09t0548300-01)
Sequence	GGGCCGCGCCGTGCGCGAACGCGCGCGCCGCGCGCACGCCACGCCACGCCACGCCACGCC GCGCCACCTGAGCCGCCCCGCGCCGCGCCGCGCGTGACCAAAAAACCCCGGGCGCCCCAA CGAAACCGCCACTTTTCCTCCTCCCCTCCGCCCCCCGTGCTCGGCGCCTCCATCATCGTG CACCGCGCCGCCCTCTTCGATCGCCCAGACGCCCACGGTGCCGTGCCCGACCCGACGCGA CTCCGCGCGGCGGCTGCGCTTGCGCTGGGCGGGGGCGGGGGGCTATGGAGCTCGCTGGCG GCGGGACGGGGGTCGTGCGGCAGCGCGCCGAGCCGCTGGGTGCTGGCCTCCTACTACGCG GCGGCGGGCGGAGTGTGGGGGGAGGAGGGATCGGCTGCGCCCGTCGCGCCACCCTGCGGG GGCTCGCGCTGTCTCCCCTCGCGAGACGGGCGGTCTCGGCCGCGGGTGGGCACTTCCTCC CCAGGCGCGCCGTTCGCGCGGCGGCCGCCGCCGGCGATGGGGGATTCTACGGCGAGGAGG ATGCCGCCAGCGACCAGCCGTTTCCGGCGCGCGCGTCTCCCTCCGATGACGCGAACGATT CTACCGCGGTGCGCAGTTTAGGTGGGGATCATCCTGGAGAAATCAAGAAGGAGCTATTGA ATCTGGCTTTACCGGCCATAGTTGGACAAGCAATCGATCCTGTGGCGCAGCTGTTAGAGA CTGCATATATTGGTCGTTTAGGTCCTGTAGAGCTTGCCTCAGCTGCCGTGGGTGTGTCAG TCTTCAATATTATATCAAAACTGTTTAACATCCCACTCTTAAGCATCACAACCTCATTTG TGGCTGAAGATGTTGCAAGACATGATTCCGATCAGTTTACTTCAGAAGGGAACATGTCTA GTGAGAGTGGAGGAAGGAAGAGACTCCCCTCCATTTCTTCAGCTATACTTTTGGCTGCTG CAATTGGTGTCATTGAGGCCTCAGCTTTGATTCTGGGGTCTGAAATACTCCTCAGCATTA TGGGTGTGTCACATGCGTCAACCATGCATAGTCCTGCAAAGTTGTTTCTTTCTTTAAGGG CACTTGGTGCTCCTGCCGTAGTGGTTTCATTGGCTATTCAAGGTATCTTTCGTGGATTGA AAGACACAAAGACACCTCTACTTTACAGTGGCTTGGGCAACATCTCAGCTGTGCTTCTAC TTCCCTTTCTCGTGTATTCGCTGAACCTTGGATTAAATGGAGCAGCTCTCGCAACTATTG CTTCACAGTATCTTGGTATGTTTCTGCTCCTTTGGTCTTTAAGCAAAAGAGCAGTTCTAC TGCCTCCAAAAATTGAAGACCTTGATTTCGTTGGGTACATAAAATCTGGTGGCATGCTAT TAGGGAGAACTCTTTCAGTTCTTATAACAATGACCCTTGGAACTGCAATGGCTGCTAGGC AAGGCACAATAGCCATGGCTGCTCATCAAATATGTCTACAGGTTTGGCTGGCGGTATCAT TACTTTCGGATGCATTGGCTGTTTCTGCCCAGGCATTGATTGCAAGTTCTTTTGCCAAGC TTGACTATGAAAAGGTCAAGGAGGTCACATACTATGTCTTGAAGATAGGACTGCTTGTTG GTGCAGCTTTAGCCCTTCTTCTGTTTGCCTCTTTTGGTAGAATTGCAGAACTGTTCTCCA AAGATCCTATGGTTCTACAAATTGTTGGGAGTGGTGTTCTGTTTGTTAGTGCCAGCCAAC CAATTAATGCCCTAGCTTTTATCTTCGATGGACTTCACTTCGGTGTCTCAGACTTCTCAT ATTCTGCTTCTTCAATGATTACTGTTGGGGCAATATCTTCTTTATTTTTGCTATATGCTC CCAAAGTTTTTGGCCTCCCTGGGGTTTGGGCTGGGCTGGCTCTTTTCATGGGTTTGCGCA TGACTGCAGGATTTTTGAGATTGGGTTCGAGAGCAGGTCCTTGGTGGTTTTTGCACCAGA AAGAGCCAACATACAAATTACACTCAAGTACATGTTGATGTTGGGCTGCAGGGGATAAAT AGGAAGATAGAGAATGGAAGTGATCAAAGGATGATTCCATCATTAAAGAAGCTGAACCTC TTGGATTTCTTGAGAATAATGCTGCCTTCATCAACCTTATCATAAAACCCCTCTGGTAGC ATTGCAATCAAGCAAGACGACATGGCAAAGGAGAAGCTGTAGTCAGGAACCATCCCATGC TTTTGTAAAGGAATGCTTTGCTTGAAGTAAGTTTCAATTACTTTTGAGATTGCCCATCTC TGAAAAAGCAGATGGAAAGAAATATTTTCAGTTTTGTGGGTTCTCAAGCTTATTAGTCTG AATGAAAGTTGAACTGGTTTC