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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0546200-00
CDS Infomation

cds chromosome:IRGSP-1.0:9:21590387:21591060:1 gene:Os09g0546200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SMALL AUXIN-UP RNA 46 description:Similar to auxin induced protein. (Os09t0546200-00)
Sequence

ATGATCAGCGCCAAGAGACTGGTTCAATTGGCAAAGTGGCAGAGGATGGCAGCCCTTGGA
AGGAAGAGGATCATGGGAAAGGCCCAAGAAACTGAAGAATGCTCCACTTCTGTAGCAGTC
AAGGGCCACTGCGTCATGTACACAGCTGATGGGAGGCGGTTTGAGGTCCCATTGGCGTAC
CTTGGCACAGTGGTCTTCAGTGAACTCCTGAGGATGTCCCAGGAGGAGTTTGGCTTCACA
AGCGACGGGAGAATTGTGTTGCCTTGTGATGCTGCAGAAATGGAGTATGCCATGTGCTTG
CTCAAGAGGAATCCATCGGTCGAGGTGGTGGATGCATTGCTCAGCTCTATGCTGATACGT
TGCCACTGCACTGGTAGTATGGTGCCAACTGTCGGAGTCAACCAGCAAATTTCCTGCTTG
TAG

Peptide Sequence

PEP ID

Os09t0546200-00
PEP Infomation

pep chromosome:IRGSP-1.0:9:21590387:21591060:1 gene:Os09g0546200 transcript:Os09t0546200-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SMALL AUXIN-UP RNA 46 description:Similar to auxin induced protein. (Os09t0546200-00)
Sequence

MISAKRLVQLAKWQRMAALGRKRIMGKAQETEECSTSVAVKGHCVMYTADGRRFEVPLAY
LGTVVFSELLRMSQEEFGFTSDGRIVLPCDAAEMEYAMCLLKRNPSVEVVDALLSSMLIR
CHCTGSMVPTVGVNQQISCL

Transcript Sequence

Transcript ID

Os09t0546200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:21590387:21591060:1 gene:Os09g0546200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SMALL AUXIN-UP RNA 46 description:Similar to auxin induced protein. (Os09t0546200-00)
Sequence

GTTCATCAGCTCCTCCAGAGACAGAAACTGAGAATCACACCTTATAGCATACCTATTCAT
ATTTTCAGCTGAAAAAACCAGCCAACCAACCATGATCAGCGCCAAGAGACTGGTTCAATT
GGCAAAGTGGCAGAGGATGGCAGCCCTTGGAAGGAAGAGGATCATGGGAAAGGCCCAAGA
AACTGAAGAATGCTCCACTTCTGTAGCAGTCAAGGGCCACTGCGTCATGTACACAGCTGA
TGGGAGGCGGTTTGAGGTCCCATTGGCGTACCTTGGCACAGTGGTCTTCAGTGAACTCCT
GAGGATGTCCCAGGAGGAGTTTGGCTTCACAAGCGACGGGAGAATTGTGTTGCCTTGTGA
TGCTGCAGAAATGGAGTATGCCATGTGCTTGCTCAAGAGGAATCCATCGGTCGAGGTGGT
GGATGCATTGCTCAGCTCTATGCTGATACGTTGCCACTGCACTGGTAGTATGGTGCCAAC
TGTCGGAGTCAACCAGCAAATTTCCTGCTTGTAGCTTCCTGAAGAAGAGCCATATGGCTT
GCCCTGTAATTGTAAATTATTATGTATTATATCTGGACCAATTCAAAACAGTTAGATGTA
GCTAATAGGAAGAGGAAAATTGCACTGTAAATCCTTTCGATCTTGCAAGCAATCAAGAAA
CACGCAGTCAGCAT