Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0543400-00
CDS Infomation

cds chromosome:IRGSP-1.0:9:21409266:21410557:-1 gene:Os09g0543400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ORNITHINE DECARBOXYLASE A description:Ornithine decarboxylase (EC 4.1.1.17). (Os09t0543400-00)
Sequence

ATGTGCAATGTTTGTTTTACAGTAACCTATCACGTAAGTACCATGGTTGGAGGAAGCCCC
ATGCAGGCCGTGCTCATGGCCCCCGGCGTCAAGGACAAGAAGGTGCTCGCCTTCAAGCGC
GGCAAGGGCAAGGACGCCGACGCCGGCGTCACGGCGCTCATCCGCGACATCGTCGCCGGC
GGCGCCCGGAGCGCGTTCCACGTCTTCGACCTCGCCAAGGTCGTCGACCTCCACCGCGGG
TGGCGCCGCGCGCTCCCCGACGTGCGCCCCTGCTACGCCGTCAAGTGCAACCCCGACGGC
GCCATGCTCGCCGCGCTCGCCGCGCTCGGCGCCGGCTTCGACTGCGCCAGCCGCGCCGAG
ATCGAGGCAGTGCTCGCGCTCGGCGTCCGCCCCGCCACCATCGTCTACGCCAACCCGTGC
AAGCCCGAGGCGCACCTCGAGTACGCCGCCGAGGTCGGCGTCAACCTCACCACCTACGAC
TCCGAGGAGGAGGTGGCCAAGGTCCGGCGATGCCACCCGCGCTGCGAGCTGCTGCTCCGC
ATCAAGGCGCCCGACTCCGGCGACGCCAAGGTCGACCTGGGGCTCAAGTACGGCGCCAAC
CCGGACGAGGTGCTACCGCTCCTCCGCGCCGCGCAGCGCGAGGGCGTCGCCGTCGCCGGC
GTCTCCTTCCACGTCGGGAGCGGCGCGTCCCGCGCCGACGTCTACCGCGGCGCCATCGAG
GCGGCGCGCGAGGCGTTCGACGCCGCGGCGGCGCTCGGCATGCCGCCGATGCGCGTCCTC
GACATCGGCGGCGGCTTCATGGCCGGCCGGACCTTCGACGAGGCGGCGGCGGTCATCAAC
CGCGCGCTGGAGCGCCACTTCGGCGACCTCCCCTGCGTCGAGGTGATCGGCGAGCCCGGG
CGGTACTTCGCCGAGACGGCGTTCACCCTCGCCGCGCGCGTCATCGGGAAGCGCACCCGC
GGCGAGCTCCGGGAGTACTGGATCGACGACGGCCTCTACGGCTCCCTCAACTGCATCCTC
ATGGACCACTACGTGCCGCGCCCGAGGCCGCTCGCCGCCGCCGCCGCCGGCGAGGACACG
ACGGCGGCGACGACGCACGCCTCGACGGTGTTCGGCCCGACGTGCGACTCCCTCGACACG
GTGGTCACCGGCTACCAGCTGCCGGAGATGAGCGTCGGCGACTGGCTCGTGTTCGACGAC
ATGGGCGCCTACACCACCGCGGCTGGCTCCAACTTCAACGGCTTCGCCACGTCAGCGATA
AAGATCCACCTGGCATACTCCAGCTAG

Peptide Sequence

PEP ID

Os09t0543400-00
PEP Infomation

pep chromosome:IRGSP-1.0:9:21409266:21410557:-1 gene:Os09g0543400 transcript:Os09t0543400-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ORNITHINE DECARBOXYLASE A description:Ornithine decarboxylase (EC 4.1.1.17). (Os09t0543400-00)
Sequence

MCNVCFTVTYHVSTMVGGSPMQAVLMAPGVKDKKVLAFKRGKGKDADAGVTALIRDIVAG
GARSAFHVFDLAKVVDLHRGWRRALPDVRPCYAVKCNPDGAMLAALAALGAGFDCASRAE
IEAVLALGVRPATIVYANPCKPEAHLEYAAEVGVNLTTYDSEEEVAKVRRCHPRCELLLR
IKAPDSGDAKVDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASRADVYRGAIE
AAREAFDAAAALGMPPMRVLDIGGGFMAGRTFDEAAAVINRALERHFGDLPCVEVIGEPG
RYFAETAFTLAARVIGKRTRGELREYWIDDGLYGSLNCILMDHYVPRPRPLAAAAAGEDT
TAATTHASTVFGPTCDSLDTVVTGYQLPEMSVGDWLVFDDMGAYTTAAGSNFNGFATSAI
KIHLAYSS

Transcript Sequence

Transcript ID

Os09t0543400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:21409266:21410557:-1 gene:Os09g0543400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ORNITHINE DECARBOXYLASE A description:Ornithine decarboxylase (EC 4.1.1.17). (Os09t0543400-00)
Sequence

ATGTGCAATGTTTGTTTTACAGTAACCTATCACGTAAGTACCATGGTTGGAGGAAGCCCC
ATGCAGGCCGTGCTCATGGCCCCCGGCGTCAAGGACAAGAAGGTGCTCGCCTTCAAGCGC
GGCAAGGGCAAGGACGCCGACGCCGGCGTCACGGCGCTCATCCGCGACATCGTCGCCGGC
GGCGCCCGGAGCGCGTTCCACGTCTTCGACCTCGCCAAGGTCGTCGACCTCCACCGCGGG
TGGCGCCGCGCGCTCCCCGACGTGCGCCCCTGCTACGCCGTCAAGTGCAACCCCGACGGC
GCCATGCTCGCCGCGCTCGCCGCGCTCGGCGCCGGCTTCGACTGCGCCAGCCGCGCCGAG
ATCGAGGCAGTGCTCGCGCTCGGCGTCCGCCCCGCCACCATCGTCTACGCCAACCCGTGC
AAGCCCGAGGCGCACCTCGAGTACGCCGCCGAGGTCGGCGTCAACCTCACCACCTACGAC
TCCGAGGAGGAGGTGGCCAAGGTCCGGCGATGCCACCCGCGCTGCGAGCTGCTGCTCCGC
ATCAAGGCGCCCGACTCCGGCGACGCCAAGGTCGACCTGGGGCTCAAGTACGGCGCCAAC
CCGGACGAGGTGCTACCGCTCCTCCGCGCCGCGCAGCGCGAGGGCGTCGCCGTCGCCGGC
GTCTCCTTCCACGTCGGGAGCGGCGCGTCCCGCGCCGACGTCTACCGCGGCGCCATCGAG
GCGGCGCGCGAGGCGTTCGACGCCGCGGCGGCGCTCGGCATGCCGCCGATGCGCGTCCTC
GACATCGGCGGCGGCTTCATGGCCGGCCGGACCTTCGACGAGGCGGCGGCGGTCATCAAC
CGCGCGCTGGAGCGCCACTTCGGCGACCTCCCCTGCGTCGAGGTGATCGGCGAGCCCGGG
CGGTACTTCGCCGAGACGGCGTTCACCCTCGCCGCGCGCGTCATCGGGAAGCGCACCCGC
GGCGAGCTCCGGGAGTACTGGATCGACGACGGCCTCTACGGCTCCCTCAACTGCATCCTC
ATGGACCACTACGTGCCGCGCCCGAGGCCGCTCGCCGCCGCCGCCGCCGGCGAGGACACG
ACGGCGGCGACGACGCACGCCTCGACGGTGTTCGGCCCGACGTGCGACTCCCTCGACACG
GTGGTCACCGGCTACCAGCTGCCGGAGATGAGCGTCGGCGACTGGCTCGTGTTCGACGAC
ATGGGCGCCTACACCACCGCGGCTGGCTCCAACTTCAACGGCTTCGCCACGTCAGCGATA
AAGATCCACCTGGCATACTCCAGCTAGGCAGC