Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0542800-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:21381391:21383318:-1 gene:Os09g0542800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os09t0542800-01)
Sequence	ATGGCTCTCCTCCTCAAGCCCAAGCGCCACCTCTTCCCCTCCTCCGCTCGCCACCTCCGA CGTCTATGCGACGCCGCGCCAACCCTGGCGCCGCCGCCGGAGCCGGAGCCAGAGCCGGAG CTGGAGCCGGAGCCCGCGTTGGCTCCGTCGCTGACCACCGCGGAAACCAAGCTCTTGGAC GCGCTCCACGCGGCCCTCGTCGACCACCGCCGCGCCCACCCGGCCGCGCCGGTGCCCGCC ACCGCGCCCTCCGAGCCGCCGCTGCCGGAGCTCTCCTCCGCGCTCTCCGGCCTGCTCGCT TCCCCTCCTTCCCCGCAGCTCCCGCTCGGCCTCCTCCGCCGCCTCCTCGCGCTCCGCCGC GGCGTCCCACTCCCCGAGGCGGTGGCGTTCTTCCACCACGTCCTCCCGTCGCTTCCGCCC GACTCGCTCCCCGCCTTGTACGCCGCCATGATAGACCTGCTCGCCAAGCACCACCACTTT CCCCTCGCCCGCCACCTGCTCGACGAAATGCGCGAGCGCTCCGTCCCCATCTCGGCGCAG CTCATCCTCGCCCTGATCCGGAGGTACGTCCGCGCGGAGATGCCGTCGGAGGCTTCCGAC CTCTTCCGCCGCATGGAGGAGTATGGCGCCGGGGCTCCCGACCCGGCCACGCTTGCTTCT CTTCTTGGGGCGCTCTCCAAGAAGCGCCTTGCCAGTGAGGCCCAGGCTATGTTTGACAGT TACAAGTCCGTCTTTACGCCGGATGTTGTGCTTTACACAACGCTGGTGCACGCGTGGTGC CGTTCTGGGCGGCTCAATGAGGCCGAGCGGGTGTTCGCTGAAATGCAGCAAGCTGGGGTC ACACCAAATGTGTATACATACACAGCGGTGATTGATGCAATGTACCGTGCAGGGCAGGTG CCCCGTGCTCAGGAGCTCCTGTGCCAGATGATCGACTCTGGGTGCCCGCCGAACACAGCG ACGTTCAATGCCATCATGAGGGCGCATGTCAAGGCTGGGCGATCCGAGCAGGTTCTGCAG GTGCACAACCAGATGCGGCAGCTCGGCTGTGAGCCCGACATTATCACATACAATTTCTTG ATGGAGACACATTGTGGGAAGGGGCAGAGTAACCTTGATGCTGCGATGAAAATGCTCACA AGGATGATTGCCAAGGGTTGCATTCCTGATTGCCACACATTTAACCCCATGCTGAAACTG GTGCTTGTGCTTGGCAATGTAAATGCTGCCCGGAAATTGTATGAGCGGATGCAGGAGCTG CAGTGCAAGCCAAATGTCGTCACATATAATTTGCTTATGAGATTGTTCAATTTGGAGAAG TCAATGGACATGGTGCTGAGGATAAAGAAGGACATGGATGCACAGGGAGTGGAGCCAAAT GTGAATACTTACGCTGCTCTAATAGAGGCCTTCTGTGGAAGGGGAAACTGGAAACGTGCA CACATGACGCTGAGGGAAATGGTTGAGGAGAAAGCCCTTAAACCCACAAAGCCAGTCTAT GATATGGTATTGGCCCTGTTGAGGAAGGCTGGTCAGCTCAGGAGGCATGAAGAGCTTGTG GAGATGATGGTGGACCGGGGTTTCATCAGCCGCCCAGCTAATGATGCATTGTGGAGGGCA ATATCTGCTTGA

Peptide Sequence

PEP ID	Os09t0542800-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:21381391:21383318:-1 gene:Os09g0542800 transcript:Os09t0542800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os09t0542800-01)
Sequence	MALLLKPKRHLFPSSARHLRRLCDAAPTLAPPPEPEPEPELEPEPALAPSLTTAETKLLD ALHAALVDHRRAHPAAPVPATAPSEPPLPELSSALSGLLASPPSPQLPLGLLRRLLALRR GVPLPEAVAFFHHVLPSLPPDSLPALYAAMIDLLAKHHHFPLARHLLDEMRERSVPISAQ LILALIRRYVRAEMPSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDS YKSVFTPDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQV PRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFL METHCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQEL QCKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRA HMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEELVEMMVDRGFISRPANDALWRA ISA

Transcript Sequence

Transcript ID	Os09t0542800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:21381391:21383318:-1 gene:Os09g0542800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os09t0542800-01)
Sequence	AGCACCCCCACCCACCTCCGCGTCGCGCGCCATGGCTCTCCTCCTCAAGCCCAAGCGCCA CCTCTTCCCCTCCTCCGCTCGCCACCTCCGACGTCTATGCGACGCCGCGCCAACCCTGGC GCCGCCGCCGGAGCCGGAGCCAGAGCCGGAGCTGGAGCCGGAGCCCGCGTTGGCTCCGTC GCTGACCACCGCGGAAACCAAGCTCTTGGACGCGCTCCACGCGGCCCTCGTCGACCACCG CCGCGCCCACCCGGCCGCGCCGGTGCCCGCCACCGCGCCCTCCGAGCCGCCGCTGCCGGA GCTCTCCTCCGCGCTCTCCGGCCTGCTCGCTTCCCCTCCTTCCCCGCAGCTCCCGCTCGG CCTCCTCCGCCGCCTCCTCGCGCTCCGCCGCGGCGTCCCACTCCCCGAGGCGGTGGCGTT CTTCCACCACGTCCTCCCGTCGCTTCCGCCCGACTCGCTCCCCGCCTTGTACGCCGCCAT GATAGACCTGCTCGCCAAGCACCACCACTTTCCCCTCGCCCGCCACCTGCTCGACGAAAT GCGCGAGCGCTCCGTCCCCATCTCGGCGCAGCTCATCCTCGCCCTGATCCGGAGGTACGT CCGCGCGGAGATGCCGTCGGAGGCTTCCGACCTCTTCCGCCGCATGGAGGAGTATGGCGC CGGGGCTCCCGACCCGGCCACGCTTGCTTCTCTTCTTGGGGCGCTCTCCAAGAAGCGCCT TGCCAGTGAGGCCCAGGCTATGTTTGACAGTTACAAGTCCGTCTTTACGCCGGATGTTGT GCTTTACACAACGCTGGTGCACGCGTGGTGCCGTTCTGGGCGGCTCAATGAGGCCGAGCG GGTGTTCGCTGAAATGCAGCAAGCTGGGGTCACACCAAATGTGTATACATACACAGCGGT GATTGATGCAATGTACCGTGCAGGGCAGGTGCCCCGTGCTCAGGAGCTCCTGTGCCAGAT GATCGACTCTGGGTGCCCGCCGAACACAGCGACGTTCAATGCCATCATGAGGGCGCATGT CAAGGCTGGGCGATCCGAGCAGGTTCTGCAGGTGCACAACCAGATGCGGCAGCTCGGCTG TGAGCCCGACATTATCACATACAATTTCTTGATGGAGACACATTGTGGGAAGGGGCAGAG TAACCTTGATGCTGCGATGAAAATGCTCACAAGGATGATTGCCAAGGGTTGCATTCCTGA TTGCCACACATTTAACCCCATGCTGAAACTGGTGCTTGTGCTTGGCAATGTAAATGCTGC CCGGAAATTGTATGAGCGGATGCAGGAGCTGCAGTGCAAGCCAAATGTCGTCACATATAA TTTGCTTATGAGATTGTTCAATTTGGAGAAGTCAATGGACATGGTGCTGAGGATAAAGAA GGACATGGATGCACAGGGAGTGGAGCCAAATGTGAATACTTACGCTGCTCTAATAGAGGC CTTCTGTGGAAGGGGAAACTGGAAACGTGCACACATGACGCTGAGGGAAATGGTTGAGGA GAAAGCCCTTAAACCCACAAAGCCAGTCTATGATATGGTATTGGCCCTGTTGAGGAAGGC TGGTCAGCTCAGGAGGCATGAAGAGCTTGTGGAGATGATGGTGGACCGGGGTTTCATCAG CCGCCCAGCTAATGATGCATTGTGGAGGGCAATATCTGCTTGATGATCTTTATGTTTATT ATGTTATTGGTGTGCAATCTCATAAAAAAGGTATTACATTGTGATCTGTACCCTACCTCA TTGAGGAATAATGATGCTTCCTGGGTAAAATGATGAGGTTGCCGAACTGAAATTTTTCAG AATGCCTGTTCTTTGGCTAGTGTGGTTATAGTCCTTATGGAGTGGGTTGCGTGTGGATGT TGGGGGTAGAGACTATACATAGTTGTGAAAGGAAGAAACATTTTGGTTTTTTGTTCAGAA CTTGTGAC