Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0542000-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:21343538:21346643:-1 gene:Os09g0542000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribonuclease P. (Os09t0542000-01)
Sequence

ATGGATCGGTACCAGAGGGTGGAGAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAG
ATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTC
CAGGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACAAAACT
GTGATGATTGCAGAGCTGATCAAGAGAAGAATTGTTGGTCTCCACCAAAACACCACCACT
GGATCTACTGATATCACTGATATGTGGGAGCCACTGGAGGAAGGCTTGCTCCCACTTGAG
ACAACAAGGCATGTATCTATGATAACTATTACCCTTTCAAAGAAGGAGCTGGACACATCC
TCCATCGGATATCAATCTCCGTTGCCTGCTGATAAGGTTAAGCCTTTGGTTGAATACGAG
AACGAAGAAGATGCTCCCTCACCTGCTGGCCGAGGGAGAGGCCGTGGTGGTCAAGGTCGT
GGAAGGGGAAGAGGCAGAGGCACACGTGGAAATGGTTACATGGACTATGCTGATGGTGGA
TGGGAGGATGACCATGCTCCTCCTGCATATGCGGGCAACGGGTACACCCGTGGAAGAGGG
CGTGGTTTTAGGGGCCGTGGCAGGAGAGGTGGCGGCTATGGAGCACAACCTGATTATCAG
CAAGATGGAGGATACTATGATGAGGCACCAGTTCACGCGCCGCCCCGAGGCCGTGGTCGT
GGTCGAGGCCGTGGGAGAGGCCCGGTCCGAGGTAGAGGACGCGGTGGCAACGTCAATGGC
GTTATGCATGCTACTGCAGTTGGCGCCTAA

Peptide Sequence

PEP ID

Os09t0542000-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:21343538:21346643:-1 gene:Os09g0542000 transcript:Os09t0542000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribonuclease P. (Os09t0542000-01)
Sequence

MDRYQRVEKPREEAPIKENEIRITTQGRMRNYITYATTLLQDKGSDEVVFKAMGRAINKT
VMIAELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKELDTS
SIGYQSPLPADKVKPLVEYENEEDAPSPAGRGRGRGGQGRGRGRGRGTRGNGYMDYADGG
WEDDHAPPAYAGNGYTRGRGRGFRGRGRRGGGYGAQPDYQQDGGYYDEAPVHAPPRGRGR
GRGRGRGPVRGRGRGGNVNGVMHATAVGA

Transcript Sequence

Transcript ID

Os09t0542000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:21343538:21346643:-1 gene:Os09g0542000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribonuclease P. (Os09t0542000-01)
Sequence

GGTTTCCCTCCTCCACCGCCACCCCCACCGCCGCAGCATCGCCGACGAGCTAGCCCGCCG
CCGCTCGAGCGCAAGTTGAGGAGAGGAGGGATGGATCGGTACCAGAGGGTGGAGAAGCCG
AGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGC
AACTACATCACCTACGCGACCACCTTGCTCCAGGATAAAGGTTCCGATGAAGTTGTATTC
AAGGCAATGGGGAGGGCAATCAACAAAACTGTGATGATTGCAGAGCTGATCAAGAGAAGA
ATTGTTGGTCTCCACCAAAACACCACCACTGGATCTACTGATATCACTGATATGTGGGAG
CCACTGGAGGAAGGCTTGCTCCCACTTGAGACAACAAGGCATGTATCTATGATAACTATT
ACCCTTTCAAAGAAGGAGCTGGACACATCCTCCATCGGATATCAATCTCCGTTGCCTGCT
GATAAGGTTAAGCCTTTGGTTGAATACGAGAACGAAGAAGATGCTCCCTCACCTGCTGGC
CGAGGGAGAGGCCGTGGTGGTCAAGGTCGTGGAAGGGGAAGAGGCAGAGGCACACGTGGA
AATGGTTACATGGACTATGCTGATGGTGGATGGGAGGATGACCATGCTCCTCCTGCATAT
GCGGGCAACGGGTACACCCGTGGAAGAGGGCGTGGTTTTAGGGGCCGTGGCAGGAGAGGT
GGCGGCTATGGAGCACAACCTGATTATCAGCAAGATGGAGGATACTATGATGAGGCACCA
GTTCACGCGCCGCCCCGAGGCCGTGGTCGTGGTCGAGGCCGTGGGAGAGGCCCGGTCCGA
GGTAGAGGACGCGGTGGCAACGTCAATGGCGTTATGCATGCTACTGCAGTTGGCGCCTAA
GCTGGCTGCTGCTATTCCAAAGCTGTTGTTTGTTGGATGCCTGCTCCAAGTATGAAGATG
TATCATCTGTGTTGTTTATGGGTTAACACCATACTCTGTATAAGCTTGACATTCTGTTAG
AATGCTGCCGGATTTTGATTTTTAACTAGGTTTGTAGGATAGTCTCTATAATGTTTGTTT
TTCTTCCAGTAGTAGTTGCAAACTAATTGTAGTGTTCAGTTGGTAAAGGTTTAGAGCAGT
GCATTCTTTCAATTTTTATATAAACCGAAATCCTGTTGCCATCTTATAATGTGCCAGCTT
CAAATAGTGAACGCGCAAATGCAGTTGGATTTTC