Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0541900-02
CDS Infomation	cds chromosome:IRGSP-1.0:9:21338806:21342170:-1 gene:Os09g0541900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 26S proteasome subunit RPN3a. (Os09t0541900-01);Similar to 26S proteasome subunit RPN3a. (Os09t0541900-02);Similar to cDNA clone:J023145D07, full insert sequence. (Os09t0541900-03)
Sequence	ATGCCGGAGGACGTCGAGATGAACGACTCCCAGCCCCAGCCCGCCGCCGCGCCACCGCCC GCGGCCTCCACCTTGCAGCATCTGAAGGAGATCGCGTCGGTGATCGAGGCCGGGTCGCTG ACCAAGGAGGTTCGCCGGATCTCCCGCGCCGTGCGCCTCACCGTCGCGCTCCGCCGCCGC CTCGCCGCCCGTGACGTCGCCGCCTTCCTCGCCTTCGCGCTGCCGCATTCCTCGGAAGCC TTCGCCCGCCTTTCCTCCCTCCTGCCCAAGGAAGATGGGAGTGAAATGGATGTTGATTTG GCAGCTCCAGCGGCTCAAGTGTCAATTAAGCATGGTCTCCCAGAGATTGAAATATACTGT TACTTGCTTGTGCTGATTTTCCTTATTGATAATAAGAAATATGATGAGGCTAAAGCATGT GCTTCTGCAAGCATTACTCGTTTGAAGAATCTTAACAGGAGAACAGTCGATGTTTTAGCT TCTAGGGTTTTCACCTATTACTCTTATGTCCACGAACTCACCAGCAGCCTTGCTGAAATT CGTGGAACTCTTCTGGCATTGCACAGAATGGCAACTTTACATCGTGATGAGCTTGGTCAG GAAACTCTACTCAACCTGCTTCTTCGCAACTACCTGCACTACAACTTGTATGACCAAGCA GAAAAGCTTAGGTCCAAGGCACCGCGTTTTGAAGCACATTCTAATCAGCAGTTCTGCAGG TATCTGTTCTACTTGGGAAAAATTAGGACAATTCAGTTGGAGTACACTGATGCAAAGGAA AGCCTACTGCAAGCTGCTCGAAAGGCACCCACTACAGCTCGTGGGTTCCGAGTTCAGTGC AACAAGTGGGCTATCATAGTGAGATTACTTTTAGGAGAAATACCAGAGAGAACTGTTTTT ATGCAGAAAGGAATGAAGGCTGCTTTGGCACCATATTTTGAGCTTACAAATGCTGTTCGA GTTGGGGACCTTGAATTGTTCAGAGCAGTGGCAGAAAAATTTGCTAGCACTTTCAGCGCG GATAGGACGCGCAATTTGATAGTGAGGCTGCGCCACAATGTCATTCGGACTGGATTGCGC AACATAAGCATTTCATACTCACGGATCTCCCTTGCTGACATTGCCAAGAAGCTGAGGTTG GACTCAGAGAACCCTGTTGCTGATGCTGAAAGTATTGTAGCCAAAGCAATCAGGGATGGG GCAATTGATGCCACCATTGATCATGCCAATGGTTGGATGGTGTCAAAAGAGACTGGTGAT GTCTACTCAACGAATGAGCCACAGATTGCTTTCAATTCAAGGATTGCATTTTGCTTGAAC ATGCACAACGAAGCGGTCAAAGCACTGAGGTTCCCTCCGAATTCTCACAAGGAAAAGGAG AGTGCTGAGAAGAGGCGCGAGAGGCTCCAACAGGAGGAAGAACTAGCAAAACACATGGCT GAGGAGGACGATGACGACTTTTAG

Peptide Sequence

PEP ID	Os09t0541900-02
PEP Infomation	pep chromosome:IRGSP-1.0:9:21338806:21342170:-1 gene:Os09g0541900 transcript:Os09t0541900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 26S proteasome subunit RPN3a. (Os09t0541900-01);Similar to 26S proteasome subunit RPN3a. (Os09t0541900-02);Similar to cDNA clone:J023145D07, full insert sequence. (Os09t0541900-03)
Sequence	MPEDVEMNDSQPQPAAAPPPAASTLQHLKEIASVIEAGSLTKEVRRISRAVRLTVALRRR LAARDVAAFLAFALPHSSEAFARLSSLLPKEDGSEMDVDLAAPAAQVSIKHGLPEIEIYC YLLVLIFLIDNKKYDEAKACASASITRLKNLNRRTVDVLASRVFTYYSYVHELTSSLAEI RGTLLALHRMATLHRDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCR YLFYLGKIRTIQLEYTDAKESLLQAARKAPTTARGFRVQCNKWAIIVRLLLGEIPERTVF MQKGMKAALAPYFELTNAVRVGDLELFRAVAEKFASTFSADRTRNLIVRLRHNVIRTGLR NISISYSRISLADIAKKLRLDSENPVADAESIVAKAIRDGAIDATIDHANGWMVSKETGD VYSTNEPQIAFNSRIAFCLNMHNEAVKALRFPPNSHKEKESAEKRRERLQQEEELAKHMA EEDDDDF

Transcript Sequence

Transcript ID	Os09t0541900-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:21338806:21342170:-1 gene:Os09g0541900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 26S proteasome subunit RPN3a. (Os09t0541900-01);Similar to 26S proteasome subunit RPN3a. (Os09t0541900-02);Similar to cDNA clone:J023145D07, full insert sequence. (Os09t0541900-03)
Sequence	CTTTGCTCTTCTCTTCTTCTCTTCCCCCGCACGCATCGCACCCGACCTCGTCGCCGTCGC CGACGCCGCCAGCCATGCCGGAGGACGTCGAGATGAACGACTCCCAGCCCCAGCCCGCCG CCGCGCCACCGCCCGCGGCCTCCACCTTGCAGCATCTGAAGGAGATCGCGTCGGTGATCG AGGCCGGGTCGCTGACCAAGGAGGTTCGCCGGATCTCCCGCGCCGTGCGCCTCACCGTCG CGCTCCGCCGCCGCCTCGCCGCCCGTGACGTCGCCGCCTTCCTCGCCTTCGCGCTGCCGC ATTCCTCGGAAGCCTTCGCCCGCCTTTCCTCCCTCCTGCCCAAGGAAGATGGGAGTGAAA TGGATGTTGATTTGGCAGCTCCAGCGGCTCAAGTGTCAATTAAGCATGGTCTCCCAGAGA TTGAAATATACTGTTACTTGCTTGTGCTGATTTTCCTTATTGATAATAAGAAATATGATG AGGCTAAAGCATGTGCTTCTGCAAGCATTACTCGTTTGAAGAATCTTAACAGGAGAACAG TCGATGTTTTAGCTTCTAGGGTTTTCACCTATTACTCTTATGTCCACGAACTCACCAGCA GCCTTGCTGAAATTCGTGGAACTCTTCTGGCATTGCACAGAATGGCAACTTTACATCGTG ATGAGCTTGGTCAGGAAACTCTACTCAACCTGCTTCTTCGCAACTACCTGCACTACAACT TGTATGACCAAGCAGAAAAGCTTAGGTCCAAGGCACCGCGTTTTGAAGCACATTCTAATC AGCAGTTCTGCAGGTATCTGTTCTACTTGGGAAAAATTAGGACAATTCAGTTGGAGTACA CTGATGCAAAGGAAAGCCTACTGCAAGCTGCTCGAAAGGCACCCACTACAGCTCGTGGGT TCCGAGTTCAGTGCAACAAGTGGGCTATCATAGTGAGATTACTTTTAGGAGAAATACCAG AGAGAACTGTTTTTATGCAGAAAGGAATGAAGGCTGCTTTGGCACCATATTTTGAGCTTA CAAATGCTGTTCGAGTTGGGGACCTTGAATTGTTCAGAGCAGTGGCAGAAAAATTTGCTA GCACTTTCAGCGCGGATAGGACGCGCAATTTGATAGTGAGGCTGCGCCACAATGTCATTC GGACTGGATTGCGCAACATAAGCATTTCATACTCACGGATCTCCCTTGCTGACATTGCCA AGAAGCTGAGGTTGGACTCAGAGAACCCTGTTGCTGATGCTGAAAGTATTGTAGCCAAAG CAATCAGGGATGGGGCAATTGATGCCACCATTGATCATGCCAATGGTTGGATGGTGTCAA AAGAGACTGGTGATGTCTACTCAACGAATGAGCCACAGATTGCTTTCAATTCAAGGATTG CATTTTGCTTGAACATGCACAACGAAGCGGTCAAAGCACTGAGGTTCCCTCCGAATTCTC ACAAGGAAAAGGAGAGTGCTGAGAAGAGGCGCGAGAGGCTCCAACAGGAGGAAGAACTAG CAAAACACATGGCTGAGGAGGACGATGACGACTTTTAGATTGGTGATTTCTTTTCATGCT TTCAGTTGCTGCCTCAAGGGTTTCATTTTGAAGCATGGGCATCCATTCAGTTTTAAGAGA CGGAAGATCTCGAAATGCCAACCCTGCTTTTCTGGGATAGTTGAAACCATGGAACCGTTG ACATTTAATTCAGTGTGTTTTATGTTTTTAACAATTTTTTTATCACTCAAACCGCTTAGA AGGCAATGTATTCTTTCCTGAAATACTGTACCGTTCAATCCTTGGGGCACAATGTTTTGA ACATGACAAGTTCAGTTCGCTCT