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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0541700-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:21336651:21338473:1 gene:Os09g0541700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-25-P14. (Os09t0541700-01);Similar to mRNA, clone: RTFL01-25-P14. (Os09t0541700-02)
Sequence

ATGGCCTTCGCCAGCTCGCTCCTCCCGGCGCCGCCGGCCAGCGTCGCCCCGGAGCTCGCC
TCCTTCCTCCCGCCCCAGGCCAAGAGGGGCGCCGTCTCCCTCGCCGCCACGCGGCGCCGG
GGAGCCCGGATTGGAGTTAGAGCCGAAGTGAATGAATCTGGAAGTGCTTTGGCTGCTGAC
GCCTTCGCCCAAGTCAAGCATGTTCTACTTCCTGTCACCGACCGCAACCCTTACCTCTCA
GAGGGCACTAGACAGGCTGCAGCAACATCCGCTTCTCTAGCAAAGAAGTATGGAGCAAAC
ATAACTGTAGTTGTGATTGATGATAAGCCCAAGGAAGAGTTCCCAGAGCATGATACTCAG
ATGTCAAGCATTAGATGGCATCTCTCAGAAGGTGGATTTACGGAGTTTGGGTTGATGGAG
CGCCTTGGGGAAGGGAAGAAACCGACGGCTATCATTGGAGAAGTCGCGGATGAGTTGGAG
TTAGACCTGGTTGTCCTAAGCATGGAAGCAATACATTCCAAGCACGTTGATGGGAATTTG
CTGGCTGAATTCATCCCGTGCCCCGTTTTACTGCTCCCGCTCTGA

Peptide Sequence

PEP ID

Os09t0541700-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:21336651:21338473:1 gene:Os09g0541700 transcript:Os09t0541700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-25-P14. (Os09t0541700-01);Similar to mRNA, clone: RTFL01-25-P14. (Os09t0541700-02)
Sequence

MAFASSLLPAPPASVAPELASFLPPQAKRGAVSLAATRRRGARIGVRAEVNESGSALAAD
AFAQVKHVLLPVTDRNPYLSEGTRQAAATSASLAKKYGANITVVVIDDKPKEEFPEHDTQ
MSSIRWHLSEGGFTEFGLMERLGEGKKPTAIIGEVADELELDLVVLSMEAIHSKHVDGNL
LAEFIPCPVLLLPL

Transcript Sequence

Transcript ID

Os09t0541700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:21336651:21338473:1 gene:Os09g0541700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-25-P14. (Os09t0541700-01);Similar to mRNA, clone: RTFL01-25-P14. (Os09t0541700-02)
Sequence

TCTCCTCTCCACGCCATTCCAGAACCAACCCTCGCCGCCGCGTCGCTCCTCTCCCCGCCG
ACGAATCCAGGCCCCCGGATTCCCCCGCGCTATGGCCTTCGCCAGCTCGCTCCTCCCGGC
GCCGCCGGCCAGCGTCGCCCCGGAGCTCGCCTCCTTCCTCCCGCCCCAGGCCAAGAGGGG
CGCCGTCTCCCTCGCCGCCACGCGGCGCCGGGGAGCCCGGATTGGAGTTAGAGCCGAAGT
GAATGAATCTGGAAGTGCTTTGGCTGCTGACGCCTTCGCCCAAGTCAAGCATGTTCTACT
TCCTGTCACCGACCGCAACCCTTACCTCTCAGAGGGCACTAGACAGGCTGCAGCAACATC
CGCTTCTCTAGCAAAGAAGTATGGAGCAAACATAACTGTAGTTGTGATTGATGATAAGCC
CAAGGAAGAGTTCCCAGAGCATGATACTCAGATGTCAAGCATTAGATGGCATCTCTCAGA
AGGTGGATTTACGGAGTTTGGGTTGATGGAGCGCCTTGGGGAAGGGAAGAAACCGACGGC
TATCATTGGAGAAGTCGCGGATGAGTTGGAGTTAGACCTGGTTGTCCTAAGCATGGAAGC
AATACATTCCAAGCACGTTGATGGGAATTTGCTGGCTGAATTCATCCCGTGCCCCGTTTT
ACTGCTCCCGCTCTGAAATGACCTTAGAGCTTTTCTTTCACCTGTCATGACTTGAATGGA
AGGCAAATAATCTGTTTCACCTCTTTCCAGATGTAATTTCTACAGATGTCTTCTGGGTCA
TTTTATGGATGTACCTTCTGAATGATTTTCTGTTGGATTCCATAATTTTGATTATGTGAA
TATCAATAAAAACATGTT