Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0539200-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:21230192:21235993:1 gene:Os09g0539200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-GALACTOSIDASE 11 description:Similar to Relative to SR12 protein (Fragment). (Os09t0539200-01)
Sequence	ATGGCCGCCCGCGTCGCGGCCGCGGTGGCGGCGGCGCTCCTCGCCGCCGCGCTGCTCCTC CCGGGCGCCGCGGCGGAGTGGACCCTCACGAAGAAGGGCACCGTCGTCTCCTACGACGAG CGCTCCCTCATGATCGACGGCAAGAGGGACCTCTTCTTCTCCGGCGCCATCCACTACCCA CGGAGCCCGCCCGAGATGTGGGATAAGCTCGTCAAGACGGCCAAGATGGGCGGCCTCAAC ACCATCGAGACGTACGTTTTCTGGAACGGCCACGAGCCCGAGCCCGGGAAGTACTATTTC GAAGGCAGATTCGACTTGATCAGGTTCCTCAACGTGATCAAGGATAACGATATGTACGCG ATTGTGCGTATAGGGCCATTCATCCAGGCAGAATGGAACCATGGTGGTTTGCCTTATTGG CTTAGGGAGATCGGCCACATTATATTCAGGGCTAACAATGAACCTTTCAAGAGGGAGATG GAGAAGTTCGTGAGGTTTATAGTGCAAAAGTTGAAGGATGCGGAGATGTTTGCACCTCAA GGAGGACCCATCATTCTATCACAGATTGAGAATGAGTACGGGAATATAAAAAAAGATCGC AAAGTAGAGGGGGATAAATACCTGGAATGGGCAGCTGAAATGGCCATTAGCACAGGGATA GGAGTTCCTTGGGTTATGTGCAAGCAATCAATTGCTCCAGGAGAAGTGATCCCTACCTGC AACGGAAGGCACTGTGGAGACACATGGACTCTACTCGATAAAAACAAGCCTCGTTTGTGG ACTGAGAATTGGACTGCACAATTCAGAACCTTTGGTGACCAGCTAGCTCAGCGTTCAGCT GAGGACATTGCATATGCTGTGTTACGTTTTTTTGCCAAGGGTGGGACGCTGGTAAACTAC TATATGTATCATGGTGGAACAAATTTTGGGAGGACAGGTGCTTCATATGTGTTGACTGGA TACTATGATGAAGCTCCTATGGATGAATACGGCATGTGCAAGGAGCCCAAATTTGGGCAT CTGAGGGACCTGCACAATGTGATCAAGTCATACCATAAGGCTTTTCTCTGGGGGAAACAA TCATTCGAGATATTGGGCCATGGGTATGAGGCACACAACTATGAGTTACCTGAAGATAAA CTGTGCCTGTCTTTCCTCTCCAACAACAACACCGGGGAAGATGGAACAGTGGTATTCCGG GGGGAGAAGTTCTATGTGCCTAGCCGCTCTGTTTCCATCCTTGCAGATTGCAAGACTGTG GTCTACAATACAAAGAGGGTGTGTGTATTGCATAAATTTACTGAAAACAAGTTACGGCCT ATCTTAAATATATTTCAATAA

Peptide Sequence

PEP ID	Os09t0539200-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:21230192:21235993:1 gene:Os09g0539200 transcript:Os09t0539200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-GALACTOSIDASE 11 description:Similar to Relative to SR12 protein (Fragment). (Os09t0539200-01)
Sequence	MAARVAAAVAAALLAAALLLPGAAAEWTLTKKGTVVSYDERSLMIDGKRDLFFSGAIHYP RSPPEMWDKLVKTAKMGGLNTIETYVFWNGHEPEPGKYYFEGRFDLIRFLNVIKDNDMYA IVRIGPFIQAEWNHGGLPYWLREIGHIIFRANNEPFKREMEKFVRFIVQKLKDAEMFAPQ GGPIILSQIENEYGNIKKDRKVEGDKYLEWAAEMAISTGIGVPWVMCKQSIAPGEVIPTC NGRHCGDTWTLLDKNKPRLWTENWTAQFRTFGDQLAQRSAEDIAYAVLRFFAKGGTLVNY YMYHGGTNFGRTGASYVLTGYYDEAPMDEYGMCKEPKFGHLRDLHNVIKSYHKAFLWGKQ SFEILGHGYEAHNYELPEDKLCLSFLSNNNTGEDGTVVFRGEKFYVPSRSVSILADCKTV VYNTKRVCVLHKFTENKLRPILNIFQ

Transcript Sequence

Transcript ID	Os09t0539200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:21230192:21235993:1 gene:Os09g0539200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-GALACTOSIDASE 11 description:Similar to Relative to SR12 protein (Fragment). (Os09t0539200-01)
Sequence	TCGCCCGCGTCGCCGCCAACCCCACCCCGCCCCACCCCACCCTACCCGCCGCCGCCGCTG GCCGTTCCCCCCTCGTAGTAGAGCCCCCCCGCGCGCGCGCCGCAGGTTCGGATGGCCGCC CGCGTCGCGGCCGCGGTGGCGGCGGCGCTCCTCGCCGCCGCGCTGCTCCTCCCGGGCGCC GCGGCGGAGTGGACCCTCACGAAGAAGGGCACCGTCGTCTCCTACGACGAGCGCTCCCTC ATGATCGACGGCAAGAGGGACCTCTTCTTCTCCGGCGCCATCCACTACCCACGGAGCCCG CCCGAGATGTGGGATAAGCTCGTCAAGACGGCCAAGATGGGCGGCCTCAACACCATCGAG ACGTACGTTTTCTGGAACGGCCACGAGCCCGAGCCCGGGAAGTACTATTTCGAAGGCAGA TTCGACTTGATCAGGTTCCTCAACGTGATCAAGGATAACGATATGTACGCGATTGTGCGT ATAGGGCCATTCATCCAGGCAGAATGGAACCATGGTGGTTTGCCTTATTGGCTTAGGGAG ATCGGCCACATTATATTCAGGGCTAACAATGAACCTTTCAAGAGGGAGATGGAGAAGTTC GTGAGGTTTATAGTGCAAAAGTTGAAGGATGCGGAGATGTTTGCACCTCAAGGAGGACCC ATCATTCTATCACAGATTGAGAATGAGTACGGGAATATAAAAAAAGATCGCAAAGTAGAG GGGGATAAATACCTGGAATGGGCAGCTGAAATGGCCATTAGCACAGGGATAGGAGTTCCT TGGGTTATGTGCAAGCAATCAATTGCTCCAGGAGAAGTGATCCCTACCTGCAACGGAAGG CACTGTGGAGACACATGGACTCTACTCGATAAAAACAAGCCTCGTTTGTGGACTGAGAAT TGGACTGCACAATTCAGAACCTTTGGTGACCAGCTAGCTCAGCGTTCAGCTGAGGACATT GCATATGCTGTGTTACGTTTTTTTGCCAAGGGTGGGACGCTGGTAAACTACTATATGTAT CATGGTGGAACAAATTTTGGGAGGACAGGTGCTTCATATGTGTTGACTGGATACTATGAT GAAGCTCCTATGGATGAATACGGCATGTGCAAGGAGCCCAAATTTGGGCATCTGAGGGAC CTGCACAATGTGATCAAGTCATACCATAAGGCTTTTCTCTGGGGGAAACAATCATTCGAG ATATTGGGCCATGGGTATGAGGCACACAACTATGAGTTACCTGAAGATAAACTGTGCCTG TCTTTCCTCTCCAACAACAACACCGGGGAAGATGGAACAGTGGTATTCCGGGGGGAGAAG TTCTATGTGCCTAGCCGCTCTGTTTCCATCCTTGCAGATTGCAAGACTGTGGTCTACAAT ACAAAGAGGGTGTGTGTATTGCATAAATTTACTGAAAACAAGTTACGGCCTATCTTAAAT ATATTTCAATAACAGAAATCGTTGATGGCTTATTCCACATATGTTACGAGGCTATTCCGA AGTTCCGCAAAACCAAGGTCAGGACAAAGCAACCCCTGGAGCAATATAACCAGACAAAGG ACACTAGTGACTATTTGTGGTACACCACAAGTTTTCGCTTGGAGTCTGATGATTTGCCCT TTAGACGCGATATTAGGCCTGTGATTCAGATCAAAAGCACTGCACATGCGATGATAGGAT TTGCCAATGATGCCTTCGTAGGTACTGGGCGTGGAAGTAAGAGGGAGAAGAGCTTCGTGT TTGAAAAACCCATGGATCTGAGAGTAGGCATCAACCATATTGCGATGTTGTCGTCGTCGA TGGGAATGAAGGACAGTGGTGGTGAACTTGTTGAAGTAAAGGGCGGCATTCAGGACTGCG TGGTACAGGGTCTCAACACAGGGACCTTGGACTTACAAGGAAATGGTTGGGGTCATAAGG CCAGGTTGGAAGGCGAGGACAAGGAGATTTACACAGAGAAAGGAATGGCCCAATTTCAGT GGAAGCCGGCAGAGAATGACCTGCCAATCACGTGGTACAAGAGATACTTTGATGAGCCAG ACGGAGACGATCCCATTGTTGTTGACATGAGCTCTATGAGCAAGGGCATGATATATGTTA ACGGAGAAGGCATTGGTCGCTACTGGACCTCATTCATAACTCTTGCCGGACACCCTTCTC AATCAGTATATCACATTCCACGAGCGTTCTTGAAACCCAAGGGCAACCTCTTGATTATAT TCGAGGAGGAGCTTGGCAAGCCAGGTGGCATCCTCATCCAGACGGTGAGGAGAGATGACA TCTGCGTGTTCATCTCGGAGCACAACCCGGCACAGATCAAGACGTGGGAGTCGGACGGCG GCCAGATCAAGCTCATAGCCGAAGACACGAGCACCCGGGGCACCTTGAACTGCCCCCCGA AGAGGACCATCCAGGAGGTCGTCTTCGCCAGCTTCGGCAACCCGGAGGGCGCGTGCGGCA ACTTCACTGCTGGCACCTGCCACACTCCTGATGCAAAGGCGATCGTTGAGAAGGAATGCC TCGGCAAGGAGTCGTGCGTGCTGCCGGTGGTAAACACGGTGTACGGCGCGGACATCAACT GCCCCGCGACGACGGCCACGCTGGCGGTGCAGGTGAGATGCAAGGTATCAGGGGCGCAGG CGGCTTAGGAAGAAGGGATGCTGCTGATTGACACATTGTTTCAATTTGGCTCCTCTTGCT TGTGTAATTCATCTCGTTTTGGTTCTCATTGATGAGTCTTGAGTGCCTTGTGTGATTAAA ATTTGGAAGAGACATGCCTTTTGGGGATCATGGGGGGTATTAATATGCAACAGGAAGGTA GCTGCTGATAGACTCGAAGATGTCTTCTATTCTTAATCCTCTCCTATCATATGTATTGAT TCTGTAGGTGTTGAAAATAATATTAACCATCACAGGTTGACAGACAGTTTGTAGTTCAGT TTGTTTAGATATATTGACAGTTTGTGCACTAATAATATGAAGCTGTTGTTACTTGCTAT