Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0539100-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:21225961:21229331:-1 gene:Os09g0539100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:3-dehydroquinate synthase description:Similar to 3-dehydroquinate synthase-like protein. (Os09t0539100-01)
Sequence	ATGGCGGCCGCCGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCG GCCGTGTCCGCCCGCCGCGCCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCG CCGTCTCGCGCCTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGC CGTGTCGTCGCGAGCGCGGCCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACG GTTGTCGACGTCGACCTCGGCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTC GACGAGCCTGACCTGCTGCAGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAAC ACCACCGTCGCGCCGCTCTACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCG AATGTTTCTGTGGAGAGCGTGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACA CTGATGAAGGTTTTCGACAAGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTT GCGTTGGGAGGTGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGT GGTGTCAATTTCATACAGATTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGA GGGAAGACCGGCATTAACCATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCA CAGTGTGTACTGATAGACACCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCA GGCATAGCTGAGGTGGTGAAGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAA GAGAAAAACATGCCAGCATTATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAG AGATCGTGTGAAAACAAAGCTGAAGTGGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGA GCAACACTTAATCTCGGCCATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGA GCATGGCTCCATGGGGAGGCTGTTGCAGCTGGAACAGTTATGGCAGCTGACATGTCTCAC CGCCTGGGTTGGATAGACGAGTCAATCAAGAAACGGGCAATTGACATACTAGAGAAAGCG AAGCTTCCAATTACACCTCCAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCC GTTGATAAGAAGGTTGCTGATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGA AGCTGTGTTTTCACTGGCGATTACGACAGGAATGCCCTCGACGAAACCCTCCGTGCATTC TGCGACTGCTGA

Peptide Sequence

PEP ID	Os09t0539100-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:21225961:21229331:-1 gene:Os09g0539100 transcript:Os09t0539100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:3-dehydroquinate synthase description:Similar to 3-dehydroquinate synthase-like protein. (Os09t0539100-01)
Sequence	MAAAASSSLLAAASSSSRAAAVSARRAPSASPAAAASLPSPSRASCAPPLRASAARTLRS RVVASAAPAMQPPPASRVSTVVDVDLGDRSYPIYIGAGLLDEPDLLQRHVHGKRVLVVTN TTVAPLYLEKVTWALTHNNPNVSVESVILPDGEKYKDMGTLMKVFDKAVESRLDRRCTFV ALGGGVIGDMCGFAAAAFLRGVNFIQIPTTLMAQVDSSVGGKTGINHPLGKNLIGAFYQP QCVLIDTETLNTLPDRELASGIAEVVKYGLIRDAPFFEWQEKNMPALLAREPSALAYAIK RSCENKAEVVAQDEKESGLRATLNLGHTFGHAIETGTGYGAWLHGEAVAAGTVMAADMSH RLGWIDESIKKRAIDILEKAKLPITPPEAMTVEKFKSIMAVDKKVADGLLRLILLKGPLG SCVFTGDYDRNALDETLRAFCDC

Transcript Sequence

Transcript ID	Os09t0539100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:21225961:21229331:-1 gene:Os09g0539100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:3-dehydroquinate synthase description:Similar to 3-dehydroquinate synthase-like protein. (Os09t0539100-01)
Sequence	GCCGCCGTCGCCGTTGCCGTCGTCTTCGTTTCGCAGCTCCACCACCTCCATGGCGGCCGC CGCCTCCTCCTCTCTGCTCGCCGCCGCCTCGTCGTCCTCCCGCGCGGCGGCCGTGTCCGC CCGCCGCGCCCCCAGCGCGAGTCCGGCCGCGGCGGCCTCCCTCCCCTCGCCGTCTCGCGC CTCCTGCGCTCCTCCCCTCCGCGCTTCCGCAGCGAGGACCCTCCGCAGCCGTGTCGTCGC GAGCGCGGCCCCCGCTATGCAGCCGCCGCCGGCGTCGAGGGTCTCCACGGTTGTCGACGT CGACCTCGGCGACCGGAGCTACCCGATCTACATCGGCGCAGGCCTTCTCGACGAGCCTGA CCTGCTGCAGAGGCATGTTCATGGGAAGAGGGTTTTGGTGGTGACCAACACCACCGTCGC GCCGCTCTACCTGGAGAAGGTGACCTGGGCACTCACGCACAACAACCCGAATGTTTCTGT GGAGAGCGTGATCCTGCCCGACGGCGAGAAGTACAAGGACATGGGCACACTGATGAAGGT TTTCGACAAGGCAGTCGAGTCCCGGCTGGACCGGCGGTGCACGTTTGTTGCGTTGGGAGG TGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTT CATACAGATTCCTACTACTCTGATGGCCCAGGTGGATTCATCTGTTGGAGGGAAGACCGG CATTAACCATCCATTGGGGAAGAACTTAATTGGGGCGTTCTACCAGCCACAGTGTGTACT GATAGACACCGAGACACTGAATACATTGCCTGACAGGGAACTGGCTTCAGGCATAGCTGA GGTGGTGAAGTATGGTCTCATAAGAGATGCACCGTTCTTTGAATGGCAAGAGAAAAACAT GCCAGCATTATTAGCAAGAGAACCAAGTGCTCTGGCCTATGCTATTAAGAGATCGTGTGA AAACAAAGCTGAAGTGGTTGCTCAGGACGAGAAGGAAAGTGGTCTCCGAGCAACACTTAA TCTCGGCCATACATTTGGCCATGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCA TGGGGAGGCTGTTGCAGCTGGAACAGTTATGGCAGCTGACATGTCTCACCGCCTGGGTTG GATAGACGAGTCAATCAAGAAACGGGCAATTGACATACTAGAGAAAGCGAAGCTTCCAAT TACACCTCCAGAGGCCATGACAGTGGAGAAGTTCAAAAGTATTATGGCCGTTGATAAGAA GGTTGCTGATGGATTGCTGAGGCTCATCCTCCTGAAAGGACCTCTGGGAAGCTGTGTTTT CACTGGCGATTACGACAGGAATGCCCTCGACGAAACCCTCCGTGCATTCTGCGACTGCTG ATTCTTCCTACTTGGATCTTCAGACTGTATACTAAATAGGCTACATTATCATTTCAGAGA GGAGACTGCATTGTATATGTATGAGATCTTTCCCCCTTTTTTTTTTGTCGGAGAAATAAT GGAGAATGTGGATAGGGGTTGGTTTCTGGTTGTAGCGCGTAAAGACTGATCAATCGTGAT ACAGTTGTCCCCATTGACAAGAAGGGTTTACTGCATTTTCCTTGCTGTTGCCAATTCTTG CACCAGATTTAATAAAGCTGTTTCTGTTTTT