Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0536000-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:21064014:21068725:-1 gene:Os09g0536000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exodeoxyribonuclease III xth family protein. (Os09t0536000-01)
Sequence	ATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGCGGGTGGCGCAGCATGGC TCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCTGCTTCCAGGAGACAAAA TTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGGGATACGAGGCTTTTATT TCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTGTTGCCACGTTTTGCCGG GTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAGCAGCTGAGGAAGGCTTT ACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGGATTTTGTTCTTGTAACT CCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGCTGCTCAAGGTGGACAAT GAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTTTTAATATATATGGCCCA GCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTA CAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTG AATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTGGATTCGAGAAGCAAACG TTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTC CGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCT GAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCAT CACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATT ATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTGGAAAGGAGGGAGAAGT AGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAA CTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGG CAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATG TCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTTGGAAAGGAAAGCTATATAT AAGGAAGAACCACCAACTGATATAGCCAAATTTTCCAAAGGTAACGACCTTCATAGTGTC ATCAAGCGGAAAATTCGTGATCAATTGTTAAATGAAGGTTCAAGTGGCAACTCCCATAAT AGCACTGCAGCATTACTGGCAACACAAAGTAGAAAAGCTTCCTTTTCTTGCAGCAAGGCT GTGTCCAACAAGAAAAACAAACATAACTTGTCTTCCCAACCTACGATCAAGTCATTTTTT CAACAACCAAAGTCAAAGCCAGGAGATAGCAGTACCAATAGCATAGTTACTCCACCAGAT ACTTTGCATGGTATGGATGAATTACATGATCCAAAGAATGACTGTCTGCCAGAAAGCATC CAGTGTACAACTCCAGCAACCGAAGATCAGGGTAACTCAGATGTACCCTGCTCGCTTTCA ACAGATAAATGCAATGAAGCAACACTGGAGTGGCAAAGAATACAGCAGAGAATGAAGATG ACCCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGC TCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGGGACCTGCATCAAACCAA GAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTAAAGAGAAACGCCGGTGA

Peptide Sequence

PEP ID	Os09t0536000-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:21064014:21068725:-1 gene:Os09g0536000 transcript:Os09t0536000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exodeoxyribonuclease III xth family protein. (Os09t0536000-01)
Sequence	MVKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFI SCNRSSKGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNSETIGDFVLVT PVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI MDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR QQSIVSFLRKGMIYEHKDAMSMDRADESCCGGGLERKAIYKEEPPTDIAKFSKGNDLHSV IKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKAVSNKKNKHNLSSQPTIKSFF QQPKSKPGDSSTNSIVTPPDTLHGMDELHDPKNDCLPESIQCTTPATEDQGNSDVPCSLS TDKCNEATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKKGSNIGRLFYVCARAQGPASNQ EANCGHFQWATVKSKEKRR

Transcript Sequence

Transcript ID	Os09t0536000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:21064014:21068725:-1 gene:Os09g0536000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exodeoxyribonuclease III xth family protein. (Os09t0536000-01)
Sequence	GGGCGTGAGGCGTGAGTGGTGGTGCGCCTGTCCGCCCCGGGCAGTCGCCTCTCGCCGGCG GCGGGCTTGGACGGCCGGAGATAGGCCGCAAACTCGCGAAGGCGCCTCCGTCGCGGCGGC AGAAGCGGGTGGCGTCCTGTCGGTGGTCGGCGTCCGGGTGGGGGGTTGGGGGAACCCTCG CGGTCGCGGCGGCGGGGATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGC GGGTGGCGCAGCATGGCTCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCT GCTTCCAGGAGACAAAATTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGG GATACGAGGCTTTTATTTCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTG TTGCCACGTTTTGCCGGGTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAG CAGCTGAGGAAGGCTTTACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGG ATTTTGTTCTTGTAACTCCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGC TGCTCAAGGTGGACAATGAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTT TTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTAC TATTTTACAAGATACTACAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTT TCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTG GATTCGAGAAGCAAACGTTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTC CATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTA ATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTT CTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATG TGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGT GGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGC TGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTC CTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATG AACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTTGG AAAGGAAAGCTATATATAAGGAAGAACCACCAACTGATATAGCCAAATTTTCCAAAGGTA ACGACCTTCATAGTGTCATCAAGCGGAAAATTCGTGATCAATTGTTAAATGAAGGTTCAA GTGGCAACTCCCATAATAGCACTGCAGCATTACTGGCAACACAAAGTAGAAAAGCTTCCT TTTCTTGCAGCAAGGCTGTGTCCAACAAGAAAAACAAACATAACTTGTCTTCCCAACCTA CGATCAAGTCATTTTTTCAACAACCAAAGTCAAAGCCAGGAGATAGCAGTACCAATAGCA TAGTTACTCCACCAGATACTTTGCATGGTATGGATGAATTACATGATCCAAAGAATGACT GTCTGCCAGAAAGCATCCAGTGTACAACTCCAGCAACCGAAGATCAGGGTAACTCAGATG TACCCTGCTCGCTTTCAACAGATAAATGCAATGAAGCAACACTGGAGTGGCAAAGAATAC AGCAGAGAATGAAGATGACCCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAA GGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGG GACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTA AAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTCCTGGA CATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTCTTCTCGGGAGCAAGC TGGTATTTGAGTCAGCAACTCGGCATTAATCTCTAGTTATGCATTACGCAGGTACATAAT TTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTTACATATGTTAT ATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCTCGGGTTTGGCT AGCTTATGTTTGCAACTACCCTTGGATGTATTAATTGAAAAACTAGCTGAGAAGCATGAA AAGAAATCAAGTGAAGTAAATTGTGTACT