Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0535100-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:21038124:21041593:1 gene:Os09g0535100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0535100-01)
Sequence

ATGGCGGATTCGAAGGGGAGCGGCGGCGCCGCCGGCGACAAGCCCGGCGCCGACGCGAGC
CCCGCCACGAATCCGGCCCCGCCAGCTGCCGCCGTGGCCGTCGCCGCTGCGGCCGCGGAC
GCCGGAGGGGACGACGACGTGGCCGCGGCCGCGGAGGCGCGGCGGCCGTTCACGGCGCTC
AGCCAGGTCGACGCCGACCTCGCCCTGGCCCGCGTGCTCCAGGAGCAGGAGCGGGCGTAC
ATGATGCTTCGCATGGGCGGAGGCGTCGGCGAGGGCAGCGATTACGGGAGCTCGGATGCC
GGGAGCTACGAGTACGACGACGAGGCCGAGGAGGACTACGAGGAGGAGCTGGAGCACCAC
CTCCGCGTCCACCACCACGAGCACGCCGTTGGGGAGGGTCGTGGCGAGGGAGAGCGAGAT
GGGGAGGGGGCTGAGGGAAGCGAGTTCGAGGAGGAGGGGTTCGACGAGGAGTATGATGAG
GAGGAAGTCGAGCCAGAGCTAGACCCCGCGGAGTACGAGGACGATGAGGCTTATGCACGA
GCTCTGCAGGATGCCGAGGAGCGCGAAGTAGCCGCGCGACTTATGGCTCTCGCGGGGATC
AGCGATTGGAGACCTGTGGAGCCTGTAGAGGAGCATGCGAATGATCCACAGGATGCGTGG
CAAGAGGTTGACCCAGATGAGTATTCTTATGAGGAATTAGTTGCATTGGGAGAAGCGGTT
GGTACAGGACACAGAGGCCTCTCTGCTGCTACACTTGCTTCTCTACCTTCAGTAACTTAC
AAGGCAGAAGGTGTCCAAGATGGCAACACAGAGCAATGTGTTATTTGTCGTGTGGAATTT
GAGGATGGTGAATCTTTGATTGCACTCCCCTGCAAGCATTCATACCATCCTGAGTGCATA
AACCAATGGCTTCAAATAAATAAGGTTTGCCCGATGTGCAGCGCGGAAGTTTCCACATCG
GACAGCAACCAGGCATGA

Peptide Sequence

PEP ID

Os09t0535100-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:21038124:21041593:1 gene:Os09g0535100 transcript:Os09t0535100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0535100-01)
Sequence

MADSKGSGGAAGDKPGADASPATNPAPPAAAVAVAAAAADAGGDDDVAAAAEARRPFTAL
SQVDADLALARVLQEQERAYMMLRMGGGVGEGSDYGSSDAGSYEYDDEAEEDYEEELEHH
LRVHHHEHAVGEGRGEGERDGEGAEGSEFEEEGFDEEYDEEEVEPELDPAEYEDDEAYAR
ALQDAEEREVAARLMALAGISDWRPVEPVEEHANDPQDAWQEVDPDEYSYEELVALGEAV
GTGHRGLSAATLASLPSVTYKAEGVQDGNTEQCVICRVEFEDGESLIALPCKHSYHPECI
NQWLQINKVCPMCSAEVSTSDSNQA

Transcript Sequence

Transcript ID

Os09t0535100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:21038124:21041593:1 gene:Os09g0535100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09t0535100-01)
Sequence

GTTCGTTAATCCTCGCCCCCTCTTTCTCTCTAATCTCCGCCAAGGCGATGGCGGATTCGA
AGGGGAGCGGCGGCGCCGCCGGCGACAAGCCCGGCGCCGACGCGAGCCCCGCCACGAATC
CGGCCCCGCCAGCTGCCGCCGTGGCCGTCGCCGCTGCGGCCGCGGACGCCGGAGGGGACG
ACGACGTGGCCGCGGCCGCGGAGGCGCGGCGGCCGTTCACGGCGCTCAGCCAGGTCGACG
CCGACCTCGCCCTGGCCCGCGTGCTCCAGGAGCAGGAGCGGGCGTACATGATGCTTCGCA
TGGGCGGAGGCGTCGGCGAGGGCAGCGATTACGGGAGCTCGGATGCCGGGAGCTACGAGT
ACGACGACGAGGCCGAGGAGGACTACGAGGAGGAGCTGGAGCACCACCTCCGCGTCCACC
ACCACGAGCACGCCGTTGGGGAGGGTCGTGGCGAGGGAGAGCGAGATGGGGAGGGGGCTG
AGGGAAGCGAGTTCGAGGAGGAGGGGTTCGACGAGGAGTATGATGAGGAGGAAGTCGAGC
CAGAGCTAGACCCCGCGGAGTACGAGGACGATGAGGCTTATGCACGAGCTCTGCAGGATG
CCGAGGAGCGCGAAGTAGCCGCGCGACTTATGGCTCTCGCGGGGATCAGCGATTGGAGAC
CTGTGGAGCCTGTAGAGGAGCATGCGAATGATCCACAGGATGCGTGGCAAGAGGTTGACC
CAGATGAGTATTCTTATGAGGAATTAGTTGCATTGGGAGAAGCGGTTGGTACAGGACACA
GAGGCCTCTCTGCTGCTACACTTGCTTCTCTACCTTCAGTAACTTACAAGGCAGAAGGTG
TCCAAGATGGCAACACAGAGCAATGTGTTATTTGTCGTGTGGAATTTGAGGATGGTGAAT
CTTTGATTGCACTCCCCTGCAAGCATTCATACCATCCTGAGTGCATAAACCAATGGCTTC
AAATAAATAAGGTTTGCCCGATGTGCAGCGCGGAAGTTTCCACATCGGACAGCAACCAGG
CATGACCAATCTTTGCTGCCATTATGGGGCTTGATGGGAGCAAATAGCGGGCATCATATG
GTCGCATCTTGTAATGTTGGGGAGAAGGCAGATAAAACTTTCGGACACATGCGAGGGACC
AGCACTATGATCTTTTGCGTTCTTCAGTCCTCTCCTGGCTTAGCTCCACTGTACTCTGTT
TGCCCGTGCCGCTATGCTCTGCATTCCCTGTGGGGGCCTCATGGCTGTTGTATGATCCAT
AAATGTACAATGGTTATATTATTATATTATATATTGCTAGCCATTCTTTTACTACCTC