Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0534000-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:20983758:20986379:-1 gene:Os09g0534000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Adipose-regulatory protein, Seipin domain containing protein. (Os09t0534000-01)
Sequence

ATGGAAGCAGACGAGCCGGCCGCCGCCGCCGCCTCCACCTCCCTCGACTCCGACGACTCC
TTCTTCGACGCCCTCGACTCCCTCCCTTCCCCACCCTCTCCTCCTCACACCCCTTCCTCC
TCCACCCTCCGCCGCCGCCGCCCGCGCCGCGGATGGAGTCTGAAGCAGCACGAGGACGAC
ACCGCCGCATCACCTACGTTCTCTGATTCATCCACCATCACCGTCGTCGACGAGGCCGTC
AAGCCCGACTCCGAGGAGACAAGCTCACACCGTCCTCCCCCGCCTCCCGAGGAGGAAGAC
GAGGAGGATGCGGCGGAGGCGGCGGTGGAGGGGGAGGTGGAGGGGGAGGTGGAGGCGAGG
GACGCGAAGCTAAATCCGGCACCGGCACCGGCACCGACGCCGACGCCTCCGCCGCCGGGC
ATTCTCGAGTCCCTCGCCATGCTCGTCATCAAGGCGGTGGTGTTCCAAGTCAGCGCGCTC
ATCAGCTGCCTCACGTTCCCGATTCGGCTGCTGCAATGGTGGTTCCTCCTCGTGACGGAC
CCTCTCGGATTGGTGCGGCGAGCGAGGGGGTGGGCGCTCGAGGTGGCTGGGCACGCCACG
GGCGCCGCGGCCGCGCGTCTCGGCGGCGGGGAAGGGGTGGGGCGCATGGTGGCGAGGCTG
GCGTGGGGGTCGCTCTGGGCGGTGTACGTCTGCGTTGTTCTGTGCTCGATTCTGGTTATG
GCGTTCCTCGGAGGAGGGCTCTTGGTGGGGAAAGTTGTGGAGGAGCCCATTCAGGTTACT
GAGACCCTGAATTTTGATTACACCAAACCGAGCCCCGTGGCATTTGTTCCTGTACAGCGG
TTGGTGCCGCCGAATCAGCGGATGCAGCTCGAGGTGTTCCTGACGCTGCCTGAATCGGAT
TACAACCGGAGGCTTGGAGTTTTCCAGGTAAGAGCAGAATTTCTATCAGCAGACGGCAAA
GTGATCTCTACCTCAAGTCAACCATGCATGCTAAAGTTTAAGAGTGCCCATATGCACTTC
ATAGAAACTTTTCTGCGAAGCGTGTCTCTTTTGTCTGGCTATTCCTCAGAATCTCAGGTC
ATAAGACTAAAAATGAGGGGCATTACAGAGGCTTCAGAACCAGTAATGGGAATAAGGATA
ATTCTTGAACAACGAGCTGAATTTAGTCCTGGTGCAGGCATCCCAGAGATCTATGCCGCA
TCACTAAAGCTTGAGGCAGAACTACCTCTGCTCAAGAGAATACTCTGGAACTGGAGATGG
ACCCTTTTTGTCTGGAGTAGCATGGGGTTCTTTGTTTTTGAATTATTGCTGGCCCTTATT
TGCTGTAGACCCTGTATATTTCCCAGGAGTGGACATAACGCTGCAACTCCTTAG

Peptide Sequence

PEP ID

Os09t0534000-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:20983758:20986379:-1 gene:Os09g0534000 transcript:Os09t0534000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Adipose-regulatory protein, Seipin domain containing protein. (Os09t0534000-01)
Sequence

MEADEPAAAAASTSLDSDDSFFDALDSLPSPPSPPHTPSSSTLRRRRPRRGWSLKQHEDD
TAASPTFSDSSTITVVDEAVKPDSEETSSHRPPPPPEEEDEEDAAEAAVEGEVEGEVEAR
DAKLNPAPAPAPTPTPPPPGILESLAMLVIKAVVFQVSALISCLTFPIRLLQWWFLLVTD
PLGLVRRARGWALEVAGHATGAAAARLGGGEGVGRMVARLAWGSLWAVYVCVVLCSILVM
AFLGGGLLVGKVVEEPIQVTETLNFDYTKPSPVAFVPVQRLVPPNQRMQLEVFLTLPESD
YNRRLGVFQVRAEFLSADGKVISTSSQPCMLKFKSAHMHFIETFLRSVSLLSGYSSESQV
IRLKMRGITEASEPVMGIRIILEQRAEFSPGAGIPEIYAASLKLEAELPLLKRILWNWRW
TLFVWSSMGFFVFELLLALICCRPCIFPRSGHNAATP

Transcript Sequence

Transcript ID

Os09t0534000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:20983758:20986379:-1 gene:Os09g0534000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Adipose-regulatory protein, Seipin domain containing protein. (Os09t0534000-01)
Sequence

AAGGGTGTAACTGAAAAATACCCCGCCCATCGTCTCTCTCTTCTCCCACCGTTCACAATT
CCTCTTCCCCTTCCCACGGAATCCTCTTCCTCCCCATGCTCCGACGACGACCATCCCTCC
GATTCCCCGGCCATGGAAGCAGACGAGCCGGCCGCCGCCGCCGCCTCCACCTCCCTCGAC
TCCGACGACTCCTTCTTCGACGCCCTCGACTCCCTCCCTTCCCCACCCTCTCCTCCTCAC
ACCCCTTCCTCCTCCACCCTCCGCCGCCGCCGCCCGCGCCGCGGATGGAGTCTGAAGCAG
CACGAGGACGACACCGCCGCATCACCTACGTTCTCTGATTCATCCACCATCACCGTCGTC
GACGAGGCCGTCAAGCCCGACTCCGAGGAGACAAGCTCACACCGTCCTCCCCCGCCTCCC
GAGGAGGAAGACGAGGAGGATGCGGCGGAGGCGGCGGTGGAGGGGGAGGTGGAGGGGGAG
GTGGAGGCGAGGGACGCGAAGCTAAATCCGGCACCGGCACCGGCACCGACGCCGACGCCT
CCGCCGCCGGGCATTCTCGAGTCCCTCGCCATGCTCGTCATCAAGGCGGTGGTGTTCCAA
GTCAGCGCGCTCATCAGCTGCCTCACGTTCCCGATTCGGCTGCTGCAATGGTGGTTCCTC
CTCGTGACGGACCCTCTCGGATTGGTGCGGCGAGCGAGGGGGTGGGCGCTCGAGGTGGCT
GGGCACGCCACGGGCGCCGCGGCCGCGCGTCTCGGCGGCGGGGAAGGGGTGGGGCGCATG
GTGGCGAGGCTGGCGTGGGGGTCGCTCTGGGCGGTGTACGTCTGCGTTGTTCTGTGCTCG
ATTCTGGTTATGGCGTTCCTCGGAGGAGGGCTCTTGGTGGGGAAAGTTGTGGAGGAGCCC
ATTCAGGTTACTGAGACCCTGAATTTTGATTACACCAAACCGAGCCCCGTGGCATTTGTT
CCTGTACAGCGGTTGGTGCCGCCGAATCAGCGGATGCAGCTCGAGGTGTTCCTGACGCTG
CCTGAATCGGATTACAACCGGAGGCTTGGAGTTTTCCAGGTAAGAGCAGAATTTCTATCA
GCAGACGGCAAAGTGATCTCTACCTCAAGTCAACCATGCATGCTAAAGTTTAAGAGTGCC
CATATGCACTTCATAGAAACTTTTCTGCGAAGCGTGTCTCTTTTGTCTGGCTATTCCTCA
GAATCTCAGGTCATAAGACTAAAAATGAGGGGCATTACAGAGGCTTCAGAACCAGTAATG
GGAATAAGGATAATTCTTGAACAACGAGCTGAATTTAGTCCTGGTGCAGGCATCCCAGAG
ATCTATGCCGCATCACTAAAGCTTGAGGCAGAACTACCTCTGCTCAAGAGAATACTCTGG
AACTGGAGATGGACCCTTTTTGTCTGGAGTAGCATGGGGTTCTTTGTTTTTGAATTATTG
CTGGCCCTTATTTGCTGTAGACCCTGTATATTTCCCAGGAGTGGACATAACGCTGCAACT
CCTTAGGCTAGCTCATGTAATGTACACTTCAAAATAAATGCAAAAGGGATGTTAATGTTG
CACGG