Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0529700-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:20744838:20748509:-1 gene:Os09g0529700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VPS22 component of ESCRT-II complex, ESCRT-II complex VPS22 component description:Similar to EAP30 family protein. (Os09t0529700-01)
Sequence	ATGAGGAGGCGACCGGGAATCGCGGGCTTGCAGAACGCAGCGGCTACTCGTGACCAATTC CGGCTGGTTGGGGAAAATGTGGCCAAGGTCAGGACCGATGTCATGAAGGAGCAGCTTGCG ACGTTTCGGACACAGCTCGAAGAATTTGCACGCAAGCATAAGAATGATATCCGTAAAAAT CCACTATTTAGACAACAGTTCCATGAGATGTGTGCAAAAGTTGGAGTAGACCCGCTGGCT TCGAATAAAGGAGCTTGGGCAGAGCTTCTAGGGATTGGTGACTTCTACTATGAATTGGGA GTTCAGATTGTTGACATATGCATAGCAACCAGAGCGACCAACGGTGGCTTGATTGACTTG CTAGATCTCCGTAAACTCCTCTGTCAGAAGAGGAAAGCTGATCTTGGATCGTTAACATCA GATGATTGTTTGCGTGCGATAAGTAAGCTGAAGGTCCTTGGTAGTGGTTTTGAAGTAATT TCTGTTGGGAAGAAAAAGCTTGTGCGTTCTGTTCCTACAGAACTGAATAAAGATCACAAT GGGATACTTGAGCTAGCTCAGGCTGAAGGTTTTGTCACCGTAGAGCAAGTCGAGAGAAAG TTCTCGTGGTCAACTGGCCGTGCCATTGACGTCCTTGAAACTTTGCTCAAGGAAGGGCTT GCGATGATCGACGATGGGCACAGGGATGGCAAGCGCAGATACTGGTTCCCGTGCGTCACT CTCAGCTCTGACTCTACTGGTGCGGATGCCAAGTCATGA

Peptide Sequence

PEP ID	Os09t0529700-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:20744838:20748509:-1 gene:Os09g0529700 transcript:Os09t0529700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VPS22 component of ESCRT-II complex, ESCRT-II complex VPS22 component description:Similar to EAP30 family protein. (Os09t0529700-01)
Sequence	MRRRPGIAGLQNAAATRDQFRLVGENVAKVRTDVMKEQLATFRTQLEEFARKHKNDIRKN PLFRQQFHEMCAKVGVDPLASNKGAWAELLGIGDFYYELGVQIVDICIATRATNGGLIDL LDLRKLLCQKRKADLGSLTSDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHN GILELAQAEGFVTVEQVERKFSWSTGRAIDVLETLLKEGLAMIDDGHRDGKRRYWFPCVT LSSDSTGADAKS

Transcript Sequence

Transcript ID	Os09t0529700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:20744838:20748509:-1 gene:Os09g0529700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VPS22 component of ESCRT-II complex, ESCRT-II complex VPS22 component description:Similar to EAP30 family protein. (Os09t0529700-01)
Sequence	CCCAAACATCATCGCCTCTCGCCGTCGTCTCGTCTCTTCCTCTGCGGCTGAACTAGTCGC CGATCCAGAGGCCGTCGTCCACTCGCGGTCCCACCGGCCACCGCCTCCGCCGCCTCTCAC CGGCGCCACCGCTGCTCTGCCTCCACCGCGTTCCTCCTCTCCACAAGCCTCGGTCGCCCA GTACGCATCCCATCCGTCGCCGTCGACCTAGCTGCCTGGTGGAGGTGGAGGCGAGGGGGA TTGACTCGGCTCCGGCGCTCCGATTGAGCCCGCAGCCGACCGATCCGGATACGATCCGCT CCGCTCCTCGCCGGAGCGGAGGCTGTCGCGAACCCAGGTAACATCCCCGCCCTAACCTCC CACGCCGCACGCACGCGAAGGCCGACGGCGGCAGCGCCATCCCCTGACGGCCGACTGCGC AGCGGCGCTCCGCCCCGCGCCCCGGCCTGGGCCTGCCCGCCTTCGGCCTTCCCCGACTCG CGCCGCTGCTGCGCCCCGCCGTGCAGCCGTTGCCTTCGCCCTTCGCGTCGGCGCTGCCGT GTCGTCGCTCCGTGCAGCGCCGTCGCGCGCGGCGCGCCCGCTGCCCGGCATCCGGCCCTC CCCCAAGCCCCAGCCCCCTTGGACTCCGCCAATTTAGACTAGGAAGCATGAGGAGGCGAC CGGGAATCGCGGGCTTGCAGAACGCAGCGGCTACTCGTGACCAATTCCGGCTGGTTGGGG AAAATGTGGCCAAGGTCAGGACCGATGTCATGAAGGAGCAGCTTGCGACGTTTCGGACAC AGCTCGAAGAATTTGCACGCAAGCATAAGAATGATATCCGTAAAAATCCACTATTTAGAC AACAGTTCCATGAGATGTGTGCAAAAGTTGGAGTAGACCCGCTGGCTTCGAATAAAGGAG CTTGGGCAGAGCTTCTAGGGATTGGTGACTTCTACTATGAATTGGGAGTTCAGATTGTTG ACATATGCATAGCAACCAGAGCGACCAACGGTGGCTTGATTGACTTGCTAGATCTCCGTA AACTCCTCTGTCAGAAGAGGAAAGCTGATCTTGGATCGTTAACATCAGATGATTGTTTGC GTGCGATAAGTAAGCTGAAGGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAAGA AAAAGCTTGTGCGTTCTGTTCCTACAGAACTGAATAAAGATCACAATGGGATACTTGAGC TAGCTCAGGCTGAAGGTTTTGTCACCGTAGAGCAAGTCGAGAGAAAGTTCTCGTGGTCAA CTGGCCGTGCCATTGACGTCCTTGAAACTTTGCTCAAGGAAGGGCTTGCGATGATCGACG ATGGGCACAGGGATGGCAAGCGCAGATACTGGTTCCCGTGCGTCACTCTCAGCTCTGACT CTACTGGTGCGGATGCCAAGTCATGACCTGTGCCGTGCCTGTTCCACTCCGTTGTTGTCA CCTGTATCCTTTTCCATTGGTTCATTTCTGTAGGCACTGAAGCACATATGGCATGCCATT TACCAGTACAGCTCTGGAAGAATCATGAGATAGCAATACACTTTTCAGGGCTGGGCTGCC GGCAAAATTTTTACATTGTGATTCGTGCATCAGGATTCTGGATGTATTTGTACTAGTGAT CTATACTATACTAGCTCTTCTTTCACG