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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0528200-02
CDS Infomation

cds chromosome:IRGSP-1.0:9:20672036:20673280:1 gene:Os09g0528200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 6 description:Similar to Homeobox-leucine zipper protein HOX6. (Os09t0528200-01);Similar to Homeobox-leucine zipper protein HOX6. (Os09t0528200-02)
Sequence

ATGGATGGGGAGGAGGACAGCGAGTGGATGATGATGGACGTTGGAGGGAAGGGCGGGAAG
GGCGGCGGCGGCGGCGGCGCGGCGGACAGGAAGAAGCGGTTCAGCGAGGAGCAGATCAAG
TCGCTGGAGTCCATGTTCGCGACGCAGACCAAGCTGGAGCCGAGGCAGAAGCTGCAGCTC
GCCAGGGAGCTCGGCCTGCAGCCTCGCCAGGTCGCCATCTGGTTCCAGAACAAGCGCGCG
CGGTGGAAGTCCAAGCAGCTCGAGCGCGAGTACTCCGCCCTCCGCGACGACTACGACGCC
CTCCTCTGCAGCTACGAGTCCCTCAAGAAGGAGAAGCTCGCCCTCATCAAGCAGCTGGAG
AAGCTGGCGGAGATGCTGCAGGAGCCACGGGGGAAGTACGGCGATAATGCCGGGGACGAC
GCGCGGTCGGGCGGCGTCGCCGGCATGAAGAAGGAGGAGTTCGTCGGCGCGGGCGGCGCC
GCCACGCTCTACTCGTCGGCCGAGGGTGGCGGGACGACGACGACGACGACGGCCAAGTTG
ATGCCCCACTTCGGCAGCGACGACGTCGACGCGGGGCTCTTCCTCCGGCCGTCGTCGCAG
CATCATCCGCCGCCGCCGCACGCCGGTGCCGGCTTCACGTCCTCCGAGCCGGCCGCCGAC
CACCAGTCCTTCAACTTCCACTCGAGCTGGCCGTCGTCCACGGAGCAGACCTGCAGCAGC
ACGCCATGGTGGGAATTCGAGAGCGAGTGA

Peptide Sequence

PEP ID

Os09t0528200-02
PEP Infomation

pep chromosome:IRGSP-1.0:9:20672036:20673280:1 gene:Os09g0528200 transcript:Os09t0528200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 6 description:Similar to Homeobox-leucine zipper protein HOX6. (Os09t0528200-01);Similar to Homeobox-leucine zipper protein HOX6. (Os09t0528200-02)
Sequence

MDGEEDSEWMMMDVGGKGGKGGGGGGAADRKKRFSEEQIKSLESMFATQTKLEPRQKLQL
ARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLE
KLAEMLQEPRGKYGDNAGDDARSGGVAGMKKEEFVGAGGAATLYSSAEGGGTTTTTTAKL
MPHFGSDDVDAGLFLRPSSQHHPPPPHAGAGFTSSEPAADHQSFNFHSSWPSSTEQTCSS
TPWWEFESE

Transcript Sequence

Transcript ID

Os09t0528200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:20672036:20673280:1 gene:Os09g0528200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 6 description:Similar to Homeobox-leucine zipper protein HOX6. (Os09t0528200-01);Similar to Homeobox-leucine zipper protein HOX6. (Os09t0528200-02)
Sequence

CATCGATCATCAGAGCTCGATCGGGCGCCATGGATGGGGAGGAGGACAGCGAGTGGATGA
TGATGGACGTTGGAGGGAAGGGCGGGAAGGGCGGCGGCGGCGGCGGCGCGGCGGACAGGA
AGAAGCGGTTCAGCGAGGAGCAGATCAAGTCGCTGGAGTCCATGTTCGCGACGCAGACCA
AGCTGGAGCCGAGGCAGAAGCTGCAGCTCGCCAGGGAGCTCGGCCTGCAGCCTCGCCAGG
TCGCCATCTGGTTCCAGAACAAGCGCGCGCGGTGGAAGTCCAAGCAGCTCGAGCGCGAGT
ACTCCGCCCTCCGCGACGACTACGACGCCCTCCTCTGCAGCTACGAGTCCCTCAAGAAGG
AGAAGCTCGCCCTCATCAAGCAGCTGGAGAAGCTGGCGGAGATGCTGCAGGAGCCACGGG
GGAAGTACGGCGATAATGCCGGGGACGACGCGCGGTCGGGCGGCGTCGCCGGCATGAAGA
AGGAGGAGTTCGTCGGCGCGGGCGGCGCCGCCACGCTCTACTCGTCGGCCGAGGGTGGCG
GGACGACGACGACGACGACGGCCAAGTTGATGCCCCACTTCGGCAGCGACGACGTCGACG
CGGGGCTCTTCCTCCGGCCGTCGTCGCAGCATCATCCGCCGCCGCCGCACGCCGGTGCCG
GCTTCACGTCCTCCGAGCCGGCCGCCGACCACCAGTCCTTCAACTTCCACTCGAGCTGGC
CGTCGTCCACGGAGCAGACCTGCAGCAGCACGCCATGGTGGGAATTCGAGAGCGAGTGAG
CATCCACACTGTTACTACTAGGCTACTCATGGATGATCCATCGATCGCCACAGATCATGC
ATGCCACGATCAGAATTTCAATTCGCCGCGAGGACGGATCAAACCTGTACTAGATCGGAT
CAGAGCAAACATAGCAGAGAAGATGATCAAACCAACAGTGATGTGTACATAGCTTTCTGT
AGATCAAAACCCCAGGCAGTCTCCTCTCCATCCAGCCATCAGCATGCGAAAATTCTCTCT
CTCTTTTTTTCCCCTCCAAGTCTTACTCGACTTCGATGTTGTTATCACAACACCACATCA
TGTAATCCAGCAACACGCCGAGATGAAAAAAAGGTTAAAAAGCTTATAGAGTTCGTTCAT
TTGATGGATCC