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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0525900-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:20549870:20553043:-1 gene:Os09g0525900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 16, RHOMBOID 16 description:Peptidase S54, rhomboid domain containing protein. (Os09t0525900-01)
Sequence

ATGGCGAGCAACGGCGGCGAGGAGAAGAGCCGGGTGGCGGCGGGGTACGGCGGGGGAGGG
TACGGGTACGGCGGGTACGAGGGGCGGGACGACAGGAAGTGGTGGCCGTGGCTCGTGCCC
ACCGTGATTGTCGCCTGCATCGCGGTGTTCATCGTCGAGATGTACGTCAACAACTGCCCC
AAGCACGGCAGCGCGCTCGGCGGCTGCGTCGCCGGCTTCCTCCGCCGCTTCTCCTTCCAG
CCGCTCCGCGAGAACCCGCTCCTCGGCCCGTCTTCCGCCACTTTGCAGAAAATGGGAGCT
CTTGACTGGAACAAAGTTGTTCATCAGCACCAAGGATGGCGTCTCATTAGCTGTATCTGG
CTCCATGCTGGCCTAATCCATTTGGTTGTGAACATGCTGAGTTTACTGTTTATTGGAATC
CGCCTTGAACAGCAATTTGGGTTCGTTCGCATTGGTGCCATATACCTGCTATCTGGTTTT
GGCGGGAGTGTGTTGTCTGCGCTTTTCCTTCGTAATAACTACATCTCTGTTGGAGCCTCT
GGAGCTTTATTTGGACTGCTTGGATCAATGCTTTCTGAGCTTATTATGAACTGGACTATT
TATTCCAACAAGGCAGCAGCCATAATAACTCTTCTATTTATAATCGCAATCAACTTGGCT
ATTGGGATACTACCTCATGCCGATAACTTTGCTCATATCGGTGGATTTGTGACGGGCTTC
CTTTTGGGATTTGTTTTGTTGGCAAGGCCACAGTTTGGTTGGATGGAACGACATGAGTTG
CCCCAAACTAATCAGCCTCCCAAATACAAAGCATACCAATATGTTTTGTGGGTTGTGGCA
TTCGTTTTGCTGCTTGTCGGGTTTGTGGTTTCACTAGTGATGCTCTTCAAGGGTAAGAAT
GGAAATGACGGATGCCACTGGTGCCACTACCTGAACTGCGTACCCACATCGAAGTGGAAG
TGCAATACCTAA

Peptide Sequence

PEP ID

Os09t0525900-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:20549870:20553043:-1 gene:Os09g0525900 transcript:Os09t0525900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 16, RHOMBOID 16 description:Peptidase S54, rhomboid domain containing protein. (Os09t0525900-01)
Sequence

MASNGGEEKSRVAAGYGGGGYGYGGYEGRDDRKWWPWLVPTVIVACIAVFIVEMYVNNCP
KHGSALGGCVAGFLRRFSFQPLRENPLLGPSSATLQKMGALDWNKVVHQHQGWRLISCIW
LHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGSVLSALFLRNNYISVGAS
GALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGILPHADNFAHIGGFVTGF
LLGFVLLARPQFGWMERHELPQTNQPPKYKAYQYVLWVVAFVLLLVGFVVSLVMLFKGKN
GNDGCHWCHYLNCVPTSKWKCNT

Transcript Sequence

Transcript ID

Os09t0525900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:20549870:20553043:-1 gene:Os09g0525900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 16, RHOMBOID 16 description:Peptidase S54, rhomboid domain containing protein. (Os09t0525900-01)
Sequence

GCTTCGAAGCCAAACCCGAGCTCCGGGGAAACCACTAGTAGCCACTTGAGCTTCTTCTTC
GCCACTGAGGGGAAGGGGAAGAGGGATCGGAGGAGATGGCGAGCAACGGCGGCGAGGAGA
AGAGCCGGGTGGCGGCGGGGTACGGCGGGGGAGGGTACGGGTACGGCGGGTACGAGGGGC
GGGACGACAGGAAGTGGTGGCCGTGGCTCGTGCCCACCGTGATTGTCGCCTGCATCGCGG
TGTTCATCGTCGAGATGTACGTCAACAACTGCCCCAAGCACGGCAGCGCGCTCGGCGGCT
GCGTCGCCGGCTTCCTCCGCCGCTTCTCCTTCCAGCCGCTCCGCGAGAACCCGCTCCTCG
GCCCGTCTTCCGCCACTTTGCAGAAAATGGGAGCTCTTGACTGGAACAAAGTTGTTCATC
AGCACCAAGGATGGCGTCTCATTAGCTGTATCTGGCTCCATGCTGGCCTAATCCATTTGG
TTGTGAACATGCTGAGTTTACTGTTTATTGGAATCCGCCTTGAACAGCAATTTGGGTTCG
TTCGCATTGGTGCCATATACCTGCTATCTGGTTTTGGCGGGAGTGTGTTGTCTGCGCTTT
TCCTTCGTAATAACTACATCTCTGTTGGAGCCTCTGGAGCTTTATTTGGACTGCTTGGAT
CAATGCTTTCTGAGCTTATTATGAACTGGACTATTTATTCCAACAAGGCAGCAGCCATAA
TAACTCTTCTATTTATAATCGCAATCAACTTGGCTATTGGGATACTACCTCATGCCGATA
ACTTTGCTCATATCGGTGGATTTGTGACGGGCTTCCTTTTGGGATTTGTTTTGTTGGCAA
GGCCACAGTTTGGTTGGATGGAACGACATGAGTTGCCCCAAACTAATCAGCCTCCCAAAT
ACAAAGCATACCAATATGTTTTGTGGGTTGTGGCATTCGTTTTGCTGCTTGTCGGGTTTG
TGGTTTCACTAGTGATGCTCTTCAAGGGTAAGAATGGAAATGACGGATGCCACTGGTGCC
ACTACCTGAACTGCGTACCCACATCGAAGTGGAAGTGCAATACCTAAGGAGTTTAGTTTT
CTGTTGAATTTTCGGCAAAAAAAAAAAACCGTAGTATTCAGAGGACCATTTTATGCTTGT
GTGTTTGTAGATATATGAACAAATTTGTTTATCATGTTTGTTCTTTACTGTATCGCGATT
TGTTCTTCCTGTAAATTTGTTCCGTCGGCCACTGAAGTTTATATAGGTTGAGCATTCTAG
TT