Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os09t0525600-01
CDS Infomation	cds chromosome:IRGSP-1.0:9:20535359:20540243:-1 gene:Os09g0525600 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os09t0525600-01);Similar to UBX domain-containing protein. (Os09t0525600-02);Similar to UBX domain-containing protein. (Os09t0525600-03)
Sequence	ATGGCGAGGCCGCCGCAGGAGGCGATCGACACCTTCGTCAGCATCACCGGCGCCGACGAG GCCCTCGCCGTCCGCAAGCTCGAGGAACATGGTGGCGACCTTAACACGGCAATCAATGCA CATTTCAATGAAGGAGACAGTACAGTGAACAGAGCCAGTCAAAACAATATACCTGAGAGT CATGATGATATGATGGACCTGGATGGACCACTTGATAATGCATTTAGAAGATCTTTGTTC CCTGAAACTTTGCGTGACCCTTTTGCACTGATGGACACAAACTTTCAGCAAAATTATTTT GACAGAGTTGGTTCCACAGATACTTTCGGTCATGGCCCACAGGTTTCACACCCTAGAGAG GTGCGAGAGATACCTATCGAAGTTAAGGATAGCAACCCGCAAACAGGCCCTTCTGGTCAG GCCCCTATTATCGAGGATGTCACTGGGCATGAATCTTCATATGGTCCTGAAGTTCGTGGG GCTATTGTAATTGATGATGATGATGATGAGCAGCCATCTGCCCCTTCTCTTCATGCTAAT ATTGATAGCTCATTGCAGCCGAACCCTTCTATTCCAACTGCACCTCCATTGGTTCATGTT ACTGACTATGACAATGATATCGAAGAGGAAATGATCCGGGCAGCAATTGAAGCTTCAAAA AGGGATGCTGAGGCAATGACAATTACAGCAGAGCAAGGAATAACACAGCCGCCAGAGGGA GTAAACATTACAGAACATTCTTTTGATGAAGAGGACAAGGGAACTGCAAGCGGAACAGCT GGAAGGCAAGGATTAGCTACAGAAAAGGTTGGATCATCTAGGCAGCCAATAGATGAAGAT ACCCTCCAAGAGGAGACTGAAGATGTAGAAGAACAGCCATTAGTTAGACGTCGTTCTAGA CGCATCCCTTCTGGAAACACTGAGTCAGCACAACCTGTGTACACGGTCGATAGTCCTCCC TCAAGTTCTCAGCCTCAAGGAAATTTGAATGATCGCCAGAATAATGGAGATGAATTTCCA TCAGAGTGGGGTGGCATTTCTTCTGAGGAGCATGATGAAGCTGTTATGCTTGAGGCTGCA ATGTTTGGTGGAATTCCAGAAGGACCCATGTATCCGTTCTCAATGCCATCTCATAGAAGC CCAAGTCTTTATCCCCATGTAGAGCATGCTCCATCACCAGCATTAACTGAACAGCGGTTG TTACGTGAGCAGCAGGATGATGAATACCTTGCATCACTCCAAGCTGATCAAGAAAAAGAG TTGAAGGCCCTACAGGAGGCCGAGCTTCGTCGCCTGGAAGAAACTGCTGCAAGAGAAGCT GCCCTTGAAAAACAGAAGCAAGAGGAAGAGGAAAGGCGTAAAAAACAACTGGAGGAAGAG GAGCTAGAGTCCAGTCTTGCATCCAAACAAGCATCATTGCCGTCAGAGCCAGCTGCAGAC GAGGAAGGTGCTGTCACACTTGTAGTCCGCATGCCTGATGGTAGTCGACAGGGGCGTCGC TTTCTGAAATCTCATAAACTTCAGTTCCTTTTTGATTTCTTAGACATTGGCAGGACTTAT AAGCCAGGAACCTACAGACTGGTAATTCGCTACTGTAAGGTCGTACCCAAGGCGTGCTTT CACCACTGGTGA

Peptide Sequence

PEP ID	Os09t0525600-01
PEP Infomation	pep chromosome:IRGSP-1.0:9:20535359:20540243:-1 gene:Os09g0525600 transcript:Os09t0525600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os09t0525600-01);Similar to UBX domain-containing protein. (Os09t0525600-02);Similar to UBX domain-containing protein. (Os09t0525600-03)
Sequence	MARPPQEAIDTFVSITGADEALAVRKLEEHGGDLNTAINAHFNEGDSTVNRASQNNIPES HDDMMDLDGPLDNAFRRSLFPETLRDPFALMDTNFQQNYFDRVGSTDTFGHGPQVSHPRE VREIPIEVKDSNPQTGPSGQAPIIEDVTGHESSYGPEVRGAIVIDDDDDEQPSAPSLHAN IDSSLQPNPSIPTAPPLVHVTDYDNDIEEEMIRAAIEASKRDAEAMTITAEQGITQPPEG VNITEHSFDEEDKGTASGTAGRQGLATEKVGSSRQPIDEDTLQEETEDVEEQPLVRRRSR RIPSGNTESAQPVYTVDSPPSSSQPQGNLNDRQNNGDEFPSEWGGISSEEHDEAVMLEAA MFGGIPEGPMYPFSMPSHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKE LKALQEAELRRLEETAAREAALEKQKQEEEERRKKQLEEEELESSLASKQASLPSEPAAD EEGAVTLVVRMPDGSRQGRRFLKSHKLQFLFDFLDIGRTYKPGTYRLVIRYCKVVPKACF HHW

Transcript Sequence

Transcript ID	Os09t0525600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:9:20535359:20540243:-1 gene:Os09g0525600 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBX domain containing protein. (Os09t0525600-01);Similar to UBX domain-containing protein. (Os09t0525600-02);Similar to UBX domain-containing protein. (Os09t0525600-03)
Sequence	CTCCACCGCATTGACACAAACACAAACAGATCGATCGCTCCTATCCTCTTTCCCCCTTCT CCTCGCGTCGCCTCCACAACCCAACCAACCATGGCGAGGCCGCCGCAGGAGGCGATCGAC ACCTTCGTCAGCATCACCGGCGCCGACGAGGCCCTCGCCGTCCGCAAGCTCGAGGAACAT GGTGGCGACCTTAACACGGCAATCAATGCACATTTCAATGAAGGAGACAGTACAGTGAAC AGAGCCAGTCAAAACAATATACCTGAGAGTCATGATGATATGATGGACCTGGATGGACCA CTTGATAATGCATTTAGAAGATCTTTGTTCCCTGAAACTTTGCGTGACCCTTTTGCACTG ATGGACACAAACTTTCAGCAAAATTATTTTGACAGAGTTGGTTCCACAGATACTTTCGGT CATGGCCCACAGGTTTCACACCCTAGAGAGGTGCGAGAGATACCTATCGAAGTTAAGGAT AGCAACCCGCAAACAGGCCCTTCTGGTCAGGCCCCTATTATCGAGGATGTCACTGGGCAT GAATCTTCATATGGTCCTGAAGTTCGTGGGGCTATTGTAATTGATGATGATGATGATGAG CAGCCATCTGCCCCTTCTCTTCATGCTAATATTGATAGCTCATTGCAGCCGAACCCTTCT ATTCCAACTGCACCTCCATTGGTTCATGTTACTGACTATGACAATGATATCGAAGAGGAA ATGATCCGGGCAGCAATTGAAGCTTCAAAAAGGGATGCTGAGGCAATGACAATTACAGCA GAGCAAGGAATAACACAGCCGCCAGAGGGAGTAAACATTACAGAACATTCTTTTGATGAA GAGGACAAGGGAACTGCAAGCGGAACAGCTGGAAGGCAAGGATTAGCTACAGAAAAGGTT GGATCATCTAGGCAGCCAATAGATGAAGATACCCTCCAAGAGGAGACTGAAGATGTAGAA GAACAGCCATTAGTTAGACGTCGTTCTAGACGCATCCCTTCTGGAAACACTGAGTCAGCA CAACCTGTGTACACGGTCGATAGTCCTCCCTCAAGTTCTCAGCCTCAAGGAAATTTGAAT GATCGCCAGAATAATGGAGATGAATTTCCATCAGAGTGGGGTGGCATTTCTTCTGAGGAG CATGATGAAGCTGTTATGCTTGAGGCTGCAATGTTTGGTGGAATTCCAGAAGGACCCATG TATCCGTTCTCAATGCCATCTCATAGAAGCCCAAGTCTTTATCCCCATGTAGAGCATGCT CCATCACCAGCATTAACTGAACAGCGGTTGTTACGTGAGCAGCAGGATGATGAATACCTT GCATCACTCCAAGCTGATCAAGAAAAAGAGTTGAAGGCCCTACAGGAGGCCGAGCTTCGT CGCCTGGAAGAAACTGCTGCAAGAGAAGCTGCCCTTGAAAAACAGAAGCAAGAGGAAGAG GAAAGGCGTAAAAAACAACTGGAGGAAGAGGAGCTAGAGTCCAGTCTTGCATCCAAACAA GCATCATTGCCGTCAGAGCCAGCTGCAGACGAGGAAGGTGCTGTCACACTTGTAGTCCGC ATGCCTGATGGTAGTCGACAGGGGCGTCGCTTTCTGAAATCTCATAAACTTCAGTTCCTT TTTGATTTCTTAGACATTGGCAGGACTTATAAGCCAGGAACCTACAGACTGGTAATTCGC TACTGTAAGGTCGTACCCAAGGCGTGCTTTCACCACTGGTGAGGGCGATATGTCATTTAG TGATCTGGGCCTAACAAGCAAGCAGGAAGCCTTATTTCTAGAAAAGATTACAGAATAGTG AAGAAAGATTTAGTCATGGTTAGGGACACCCTCAGAAAGTTGTGTTTTTACATTTTTTTT TATACTTGCATCTTGCTTTTGTTAGTAAAAATAGTACAACTGGTTTATGGTTCAGTTGAG AGTCCTCTTCTGCGGTGTGAAATGGCGGTGATGCCGTGATGTTGATACTTCTCTCCTTTT GAGTTCGATGTTAATGTCAGGGTAAACCATAAACAACATGGAGCCAGGATATTTATAGGA TGATGATACCTTTAGTTAAAACC