Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os09t0520800-01
CDS Infomation

cds chromosome:IRGSP-1.0:9:20349158:20350901:-1 gene:Os09g0520800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 29 (alpha-L-fucosidase) protein. (Os09t0520800-01)
Sequence

ATGATGGGTCGGTGCGCGTCGCCGCTTTGCGCTCTCGCCGCCGCGCTGATCGCCGCCGTT
GTGGCGGCCACATCGTCGTCGTTGGCGGAGGCGACGGCGACGCCGCCGCTGCCGGTGCTG
CCGGTGCCGACGGCGGCGCAGCTGAGGTGGCAGCGGCGGGAGGTGATCATGTTCTTCCAC
TTCGGGATGAACACGTTCACGGACTCCGAGTGGGGCACGGGGCGGGAGCCGCCGGCGGCG
TTCCGCCCGGCGGCGCTGGACGCGTCGCAGTGGATGGACGCGGCGGCCGCGGCGGGCGCG
TCGCTCGTCGTCCTCGTCGCCAAGCACCACGACGGGTTCTGCCTCTGGCCGTCCGCGCAC
ACGGCGCACTCCGTCCGCGCCAGCCCGTGGCGCGGCGGCCGCGGCGACGTCGTGCGGGAG
TTCGCCGACGCCGCGCGCGCCCGCGGCCTCGACATCGGGATCTACCTCTCGCCGTGGGAT
CGCCACGACAAGCGGTACGGCCGCGAGGTCGCCTACAACGAGTACTACCTCGCCCAGCTC
CACGAGCTCCTCACTGGGTACGGGAGCGTGTCGGAGATATGGTTCGACGGCGCCAAGGGG
AAGAACGCGACGAACATGACGTACCATTTCCAGGAGTGGTTCCAGACGGTGCGGCAGCTG
CAGAGCTCCATCAACATCTTCTCCGACGACGGCCCCGACCTCCGGTGGGTCGGCGACGAG
AATGGCTCCGCCGGATCCACCTGCTGGTCCACCATCAACCGCTCCAAGATCACCATCGGC
GAGGCCGGCATCGAGAAGTACCTGAACACCGGCGACCCGAGGGGGAAGGACTGGGTGCCG
CCGGAGTGCGACGTGTCGATCCGGCCGGGGTGGTTCTGGCACAAGAACGAGACGGCGAAG
CCGCTGCCGGAGCTGCTCGAGGTATACTACAACTCGGTGGGCCGCAACTGCGTGCTGCTG
CTGAACGCGCCGCCGAACACCACGGGCCTCGTCGACGCCGCCGACATCGCCAGGCTGCGC
GAGTTCCGCACCGCCGTGACGGCCATCTTCGGCACCGACCTCGCCGCGGGCAGCGCGGCG
AGGGCGAGCAGCGAGCGCGGCGGCAGGTTCGCGGCGGCCAACGTGCTCGACGGCCGCGAC
GACACGTACTGGGCACCGGCCGCGGCGGAGGCGGAGGACGGCGGCGGGTACTGGATCGAG
CTGCGGCGGCCGGCGTCGGCGGCGGCGAGGAAGTTCAACGTGGTGAGGATCCAGGAGCAC
GTGGCGATGGGGCAGCGGGTGGAGCGGCACGAGGTGTACGTGGACGGCGGCGGCGCGGCG
GTGGCGAGCGGCACGACGGTGGGGCACAAGCGGCTGCACAGGCTGGGCGCCCCCGTGGCG
GGGCGGACGGTGAGGGTGTGGCTGGCGTCGCGGCGAGGCCCGCCGCTGCTGTCGGCGGTG
GGGCTCCACCTCGACCCCTTCGCCGCCGGCGGGGGCACGATGTGA

Peptide Sequence

PEP ID

Os09t0520800-01
PEP Infomation

pep chromosome:IRGSP-1.0:9:20349158:20350901:-1 gene:Os09g0520800 transcript:Os09t0520800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 29 (alpha-L-fucosidase) protein. (Os09t0520800-01)
Sequence

MMGRCASPLCALAAALIAAVVAATSSSLAEATATPPLPVLPVPTAAQLRWQRREVIMFFH
FGMNTFTDSEWGTGREPPAAFRPAALDASQWMDAAAAAGASLVVLVAKHHDGFCLWPSAH
TAHSVRASPWRGGRGDVVREFADAARARGLDIGIYLSPWDRHDKRYGREVAYNEYYLAQL
HELLTGYGSVSEIWFDGAKGKNATNMTYHFQEWFQTVRQLQSSINIFSDDGPDLRWVGDE
NGSAGSTCWSTINRSKITIGEAGIEKYLNTGDPRGKDWVPPECDVSIRPGWFWHKNETAK
PLPELLEVYYNSVGRNCVLLLNAPPNTTGLVDAADIARLREFRTAVTAIFGTDLAAGSAA
RASSERGGRFAAANVLDGRDDTYWAPAAAEAEDGGGYWIELRRPASAAARKFNVVRIQEH
VAMGQRVERHEVYVDGGGAAVASGTTVGHKRLHRLGAPVAGRTVRVWLASRRGPPLLSAV
GLHLDPFAAGGGTM

Transcript Sequence

Transcript ID

Os09t0520800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:9:20349158:20350901:-1 gene:Os09g0520800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycoside hydrolase, family 29 (alpha-L-fucosidase) protein. (Os09t0520800-01)
Sequence

AACACAAAACGGGAGAAGAGATGATGGGTCGGTGCGCGTCGCCGCTTTGCGCTCTCGCCG
CCGCGCTGATCGCCGCCGTTGTGGCGGCCACATCGTCGTCGTTGGCGGAGGCGACGGCGA
CGCCGCCGCTGCCGGTGCTGCCGGTGCCGACGGCGGCGCAGCTGAGGTGGCAGCGGCGGG
AGGTGATCATGTTCTTCCACTTCGGGATGAACACGTTCACGGACTCCGAGTGGGGCACGG
GGCGGGAGCCGCCGGCGGCGTTCCGCCCGGCGGCGCTGGACGCGTCGCAGTGGATGGACG
CGGCGGCCGCGGCGGGCGCGTCGCTCGTCGTCCTCGTCGCCAAGCACCACGACGGGTTCT
GCCTCTGGCCGTCCGCGCACACGGCGCACTCCGTCCGCGCCAGCCCGTGGCGCGGCGGCC
GCGGCGACGTCGTGCGGGAGTTCGCCGACGCCGCGCGCGCCCGCGGCCTCGACATCGGGA
TCTACCTCTCGCCGTGGGATCGCCACGACAAGCGGTACGGCCGCGAGGTCGCCTACAACG
AGTACTACCTCGCCCAGCTCCACGAGCTCCTCACTGGGTACGGGAGCGTGTCGGAGATAT
GGTTCGACGGCGCCAAGGGGAAGAACGCGACGAACATGACGTACCATTTCCAGGAGTGGT
TCCAGACGGTGCGGCAGCTGCAGAGCTCCATCAACATCTTCTCCGACGACGGCCCCGACC
TCCGGTGGGTCGGCGACGAGAATGGCTCCGCCGGATCCACCTGCTGGTCCACCATCAACC
GCTCCAAGATCACCATCGGCGAGGCCGGCATCGAGAAGTACCTGAACACCGGCGACCCGA
GGGGGAAGGACTGGGTGCCGCCGGAGTGCGACGTGTCGATCCGGCCGGGGTGGTTCTGGC
ACAAGAACGAGACGGCGAAGCCGCTGCCGGAGCTGCTCGAGGTATACTACAACTCGGTGG
GCCGCAACTGCGTGCTGCTGCTGAACGCGCCGCCGAACACCACGGGCCTCGTCGACGCCG
CCGACATCGCCAGGCTGCGCGAGTTCCGCACCGCCGTGACGGCCATCTTCGGCACCGACC
TCGCCGCGGGCAGCGCGGCGAGGGCGAGCAGCGAGCGCGGCGGCAGGTTCGCGGCGGCCA
ACGTGCTCGACGGCCGCGACGACACGTACTGGGCACCGGCCGCGGCGGAGGCGGAGGACG
GCGGCGGGTACTGGATCGAGCTGCGGCGGCCGGCGTCGGCGGCGGCGAGGAAGTTCAACG
TGGTGAGGATCCAGGAGCACGTGGCGATGGGGCAGCGGGTGGAGCGGCACGAGGTGTACG
TGGACGGCGGCGGCGCGGCGGTGGCGAGCGGCACGACGGTGGGGCACAAGCGGCTGCACA
GGCTGGGCGCCCCCGTGGCGGGGCGGACGGTGAGGGTGTGGCTGGCGTCGCGGCGAGGCC
CGCCGCTGCTGTCGGCGGTGGGGCTCCACCTCGACCCCTTCGCCGCCGGCGGGGGCACGA
TGTGACGTCACAAAAACAGTAGTAATATGGAATAATTTGGTGAGATATAATATCATCATG
AGCAATAATTGGTTTG